Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f10
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.87 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.6  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   8.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.1  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 231 YENGCDFFCLPYWLLHLLSNLP 296
           Y+NG   F +PY+L  +L+ +P
Sbjct: 12  YKNGGGAFLIPYFLTLVLAGIP 33


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 246 HSHFHIIPIHH 214
           HSH H  P HH
Sbjct: 423 HSHIHATPHHH 433


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 415 VRTIEGFCSGAMQPSM 462
           V   EGFC+  +QPS+
Sbjct: 66  VTKCEGFCNSQVQPSV 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 231 YENGCDFFCLPYWLLHLLSNLP 296
           Y+NG   F +PY++   L+ +P
Sbjct: 50  YKNGGGAFMVPYFIALALAGVP 71


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 231 YENGCDFFCLPYWLLHLLSNLP 296
           Y+NG   F +PY++   L+ +P
Sbjct: 103 YKNGGGAFMVPYFIALALAGVP 124


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 415 VRTIEGFCSGAMQPSM 462
           V   EGFC+  +QPS+
Sbjct: 66  VTKCEGFCNSQVQPSV 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -1

Query: 482 QCLST*TMLGCIAPEQNPSIVLTTNKAQKS*YAEAGVRQLNTPDDSPAITTTHLGPSLSP 303
           +CL+      C+ PE   ++     KAQK    +     +N    S  I +  +G  + P
Sbjct: 246 KCLTVGMRPECVVPEYQCAVKRKEEKAQKE-KDKPNSTTMNGSPGSGGIRSDQMGVKIEP 304


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 106 ISVHIVDMIQVSKREGGNNYSSLI 177
           I  H+V + + +  +G ++YS+LI
Sbjct: 86  IDGHVVTINETTYTDGSDDYSTLI 109


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 106 ISVHIVDMIQVSKREGGNNYSSLI 177
           I  H+V + + +  +G ++YS+LI
Sbjct: 134 IDGHVVTINETTYTDGSDDYSTLI 157


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 106 ISVHIVDMIQVSKREGGNNYSSLI 177
           I  H+V + + +  +G ++YS+LI
Sbjct: 134 IDGHVVTINETTYTDGSDDYSTLI 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,694
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)