Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f08
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    27   3.5  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   8.1  

>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  VERTSETILKVCDLAGARLADSLAYYCCRKPTQLMMLMQV 145
           + +T  TI+ V   A  R+  + A YCC K    M++M +
Sbjct: 125 LRKTKGTIVIVSSGAAVRVFPAWAAYCCSKAAINMLVMNL 164


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 692 YIFFMFRLRGLYVRHFVTALMVGFRMISL 606
           Y+F M   RGLY+ H++  + V  ++I +
Sbjct: 151 YLFAMCLYRGLYIPHWIYRIAVHKKVIGV 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,893
Number of Sequences: 5004
Number of extensions: 46986
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)