Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f04
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    28   0.47 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   1.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   1.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   2.5  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   3.3  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   3.3  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    24   7.6  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    24   7.6  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 275 FSLPRLQFTITYYNFLVDFMIW*SSCWLPLVLASCRNKCTKNRIYNSDNTGLWCICNRLR 96
           +SLP L   +  Y++  D M    S W  +++   R + T N+ Y   +  LWC+  R+ 
Sbjct: 174 YSLPVLIRHVLLYDYYTDDMK--DSLWRAMIIYVSR-QVTSNK-YTKFH--LWCVQKRIG 227

Query: 95  NLRTALL 75
           N+R  L+
Sbjct: 228 NIRMYLV 234


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 85  VRRLRRRLQMHHKPVLSEL*MRFFVHLFRQEASTSGSQQE 204
           +R +  R+Q++ KP+  EL  ++F  ++ +  +  GS  E
Sbjct: 124 LRSVCERIQLNGKPISQELFTKYFFDVWERLENAVGSDSE 163


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 187 WCWLLAGTNARRIAFTI 137
           WCWL+AG     IA ++
Sbjct: 98  WCWLIAGAGCMCIALSV 114


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 194 LPLVLASCRNKCTKNRIYNSDNTGLWCICNRLRNLRT 84
           +P  L    ++C     YN +  G +CIC+ + N  T
Sbjct: 97  IPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPET 133


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = +2

Query: 86  CGGCGDDCKC---TINQC-CQNCKCDS 154
           C  C + C C    ++ C C +CKC S
Sbjct: 23  CQDCKESCGCKSSAVDNCKCSSCKCAS 49



 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = +2

Query: 95  CGDDCKCTINQCCQNCKCDSS----CICSGKKPA 184
           C    KC    C ++C C SS    C CS  K A
Sbjct: 15  CDCQSKCGCQDCKESCGCKSSAVDNCKCSSCKCA 48


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 163  NARRIAFTILTTLVYGAFAIVSATSARHC*WFEMRLIWLN 44
            NA+  A T  TT V+G   +V+ TSA     F  +  W N
Sbjct: 2060 NAQVTAVTTKTTNVHGDEMVVTTTSAYENEKFSSKTEWRN 2099


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 59  SHFKPLTMPCGGCGDDCKCTI 121
           S FK LT  C G  D+C C +
Sbjct: 702 SSFKTLTTMCFGGDDNCGCQV 722


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 201 LLASTGAGFLPEQMHE 154
           L+A T  G +PE++HE
Sbjct: 256 LIAKTAEGLVPEEIHE 271


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 1    ENKSVLQHKTFVIQHLTKLVSFQTINNAVRRLRRRLQMHHKP 126
            +N+ +    +  IQHL   VSF ++ + V+   ++ ++ + P
Sbjct: 963  DNEELRNEFSEFIQHLESEVSFNSLRSFVQEFEKKERLKNLP 1004


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,782
Number of Sequences: 5004
Number of extensions: 25054
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)