Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18f02
         (207 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   5.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   6.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   8.2  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.6 bits (36), Expect(2) = 5.8
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 113 LPIGPWSG 90
           LPI PW G
Sbjct: 81  LPIEPWHG 88



 Score = 18.2 bits (35), Expect(2) = 5.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 143 HVFGFLLIDKLPIGP 99
           HVF  +   K PIGP
Sbjct: 60  HVFYGIPFAKPPIGP 74


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 18.6 bits (36), Expect(2) = 6.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 113 LPIGPWSG 90
           LPI PW G
Sbjct: 81  LPIEPWHG 88



 Score = 18.2 bits (35), Expect(2) = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 143 HVFGFLLIDKLPIGP 99
           HVF  +   K PIGP
Sbjct: 60  HVFYGIPFAKPPIGP 74


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 88  GPDQGPIGSLSINKNPKTWE 147
           GP   PI ++++  + +T+E
Sbjct: 57  GPTHAPIFTIAVQIDGQTYE 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,134
Number of Sequences: 438
Number of extensions: 808
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)