Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e22
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    26   9.1  
01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305     26   9.1  

>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 164 LQHLEAIHNDPFNWNLFKSL------TFFFLGLKLF 253
           LQ LEA+ N+ +NW L++S+      TF F G   F
Sbjct: 280 LQKLEALRNEEYNW-LWRSVRLSAVTTFIFWGAPAF 314


>01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305
          Length = 396

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 101 GAIITCVKDINGLCEGGLFECLQHLEAIHNDPFNWN 208
           GA++  V D    C GGL++ +    A  ND    N
Sbjct: 295 GAVVVTVGDQLQACNGGLYKSVAGKPAYSNDDLRGN 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,049
Number of Sequences: 37544
Number of extensions: 83456
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)