Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e20
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    30   0.23 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    30   0.23 
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    27   2.8  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   4.9  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   4.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   6.5  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   8.6  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.6  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   8.6  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 336 SSSPDRACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRFVS 461
           S SP+R  N+V++F+  P++    + + EP  L F  P ++S
Sbjct: 28  SDSPNRHHNLVDAFMQSPSYSTQPKSAVEPLGLSFS-PGYIS 68


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 321 TLFDQSSSPDRACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRFVSHEMLKKRNFVKDD 500
           T FD+S++  +  +I +S  PDP     QRP  + ++  F +P+  +       NFVK D
Sbjct: 149 TSFDESTAKSKKRSIADSHFPDP--NAMQRP-HDLESQPFSYPKIHASNSF---NFVKRD 202

Query: 501 I 503
           I
Sbjct: 203 I 203


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 381 PDPTWKNFQRPSKEPDALGFGFPRFVSHEMLKKRNFVKDDIMFLRVKVDPSKNR 542
           PDP +   Q PS + DA         + E LKK + + ++I+ L    D ++ R
Sbjct: 218 PDPLYSASQPPSIKTDASPVDIKNMDAAEKLKKIDLLLEEILQLDSAYDAAERR 271


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 365 NVAGSVRAGALVEESEGDSVGEWPAEQSVVLSGQYLDVNR 246
           N+      G +V++  G SVG++P + +V ++ +YL   R
Sbjct: 6   NIENDPSKGWVVQKFGGTSVGKFPIKIAVDVAKEYLSTKR 45


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 168 YTSQYGYKLQ-ASLFLNGNGAGESTHMSVYIKILPGEYDALLRWPF 302
           Y   YGY     ++F+ G G  E     ++I IL G   AL   PF
Sbjct: 344 YALLYGYFFAYPNVFVKGKGYNEGITGLMFIPILVGVVGALSTTPF 389


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 240  HMSVYIKILPGEYDALL 290
            H+S ++K+LP EY A+L
Sbjct: 1542 HLSRFVKVLPREYKAVL 1558


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 37  RCGRRSRACRSTAPARSSGGSRTGPPRWPRP 129
           R G  + A  ST P   SG  R  PP   +P
Sbjct: 178 RLGTENEASGSTTPVTQSGPPRENPPTESQP 208


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +3

Query: 459 SHEMLKKRNFVKD----DIMFLRVKVDPSKNR 542
           SH+MLK+  F+ D    D  F+++  DP  N+
Sbjct: 380 SHKMLKRSQFLNDHFDADFNFIQIDHDPITNQ 411


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 459 IQTLGNQILMRLALSRVAGSSSTLDPVQMTPQCCRLGPGW 340
           +  LG      LA+S + G  +  + V+     CR+ P W
Sbjct: 174 LYALGIPTTQALAISNLEGVVAQRETVEPCAVVCRMAPSW 213


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 442 PN-PNASGSFEGRWKFFHVGSGTNDSTMLQARSGLELWSKRVKE-TVWANGQRSKASYS 272
           PN PN+S +FE   +   +    NDS + +  + L   SK +K+ T+ +   RS  S S
Sbjct: 151 PNKPNSSDAFESNKEDSPLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSS 209



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 517 TLKNIISSLTKFLFLSISWDTNLGKPNPNASGSFEGRWKFFHVGSGTNDS 368
           +L+N +SS  +  F+  S+  N   P    SGSF  +   +   SG ++S
Sbjct: 582 SLRNYLSSSWRLKFMRSSYQNNETDPLNPTSGSFLRQPMQYSSPSGVSES 631


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 1   GQSRRGRRGSWTRCGRRSRACRSTAPARSSGGSRTGPP 114
           G SR GR G   R G   R        R  GG+R+G P
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 25  GSWTRCGRRSRACRSTAPARSSGGSRTG 108
           G +TRC R  +AC+  A    S   RTG
Sbjct: 114 GFYTRCKRLHQACQHLAKLHPSEIPRTG 141


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 296 AIRPHCLLHSLRPELQPGPSLQ 361
           A +P C++HS+ PE+   P  Q
Sbjct: 351 APKPVCVIHSVTPEVYKNPRYQ 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,321
Number of Sequences: 5004
Number of extensions: 48882
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)