Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18e20
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 86 2e-17
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 86 2e-17
AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical... 61 7e-10
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ... 32 0.37
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 2.6
AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical ... 28 4.5
Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical pr... 28 5.9
U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical pr... 28 5.9
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 27 7.9
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 85.8 bits (203), Expect = 2e-17
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Frame = +3
Query: 84 LVWRIADWTAKMAEAKCKDGVELVSPAFYTSQYGYKLQASLFLNGNGAGESTHMSVYIKI 263
L+W+I + EAK + S F + ++GYK+ A L G+G+ +S+Y+ +
Sbjct: 265 LIWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLL 324
Query: 264 LPGEYDALLRWPFAHTVSFTLFDQSSSPDRACNIVESFVPDP-----TWKNFQRPSKEPD 428
L GE+D L WPF + +L DQ+ P+ NI ++V DP K RP E +
Sbjct: 325 LKGEFDPTLEWPFHRAIKISLLDQNPRPEDRVNI--TYVIDPRKLKANEKFLARPRGERN 382
Query: 429 ALGFGFPRFVSHEMLKKRNFVKDDIMFLRVKVD 527
A FG F S +L +N+VKDD +++++ VD
Sbjct: 383 A-AFGSQSFCSLAIL--QNYVKDDKIYVQIDVD 412
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 85.8 bits (203), Expect = 2e-17
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Frame = +3
Query: 84 LVWRIADWTAKMAEAKCKDGVELVSPAFYTSQYGYKLQASLFLNGNGAGESTHMSVYIKI 263
L+W+I + EAK + S F + ++GYK+ A L G+G+ +S+Y+ +
Sbjct: 265 LIWKIDKLQQRTNEAKSGADTTIFSVPFMSHRFGYKMMACACLFGDGSSAGKSISLYVLL 324
Query: 264 LPGEYDALLRWPFAHTVSFTLFDQSSSPDRACNIVESFVPDP-----TWKNFQRPSKEPD 428
L GE+D L WPF + +L DQ+ P+ NI ++V DP K RP E +
Sbjct: 325 LKGEFDPTLEWPFHRAIKISLLDQNPRPEDRVNI--TYVIDPRKLKANEKFLARPRGERN 382
Query: 429 ALGFGFPRFVSHEMLKKRNFVKDDIMFLRVKVD 527
A FG F S +L +N+VKDD +++++ VD
Sbjct: 383 A-AFGSQSFCSLAIL--QNYVKDDKIYVQIDVD 412
>AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical
protein Y110A7A.2 protein.
Length = 335
Score = 60.9 bits (141), Expect = 7e-10
Identities = 39/138 (28%), Positives = 66/138 (47%)
Frame = +3
Query: 129 KCKDGVELVSPAFYTSQYGYKLQASLFLNGNGAGESTHMSVYIKILPGEYDALLRWPFAH 308
K K + S FY+ YGYK+ A G+G + SV++ ++ GE+D +L WPF
Sbjct: 176 KNKSHRSIYSQPFYSHGYGYKMMAVAAPYGDGLAFREYFSVFVCLMKGEWDDILEWPFRC 235
Query: 309 TVSFTLFDQSSSPDRACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRFVSHEMLKKRNF 488
V+F++ I + +P+ + +RP + FGF F+ + K F
Sbjct: 236 DVTFSILSDDKKELLTKTIYVNEMPE-IQEFLERPEGLRNGT-FGFQNFL--PLAKVTEF 291
Query: 489 VKDDIMFLRVKVDPSKNR 542
D +F+++KV SK +
Sbjct: 292 AADGDIFIQIKVLLSKEK 309
>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
protein F52G3.4 protein.
Length = 1009
Score = 31.9 bits (69), Expect = 0.37
Identities = 23/88 (26%), Positives = 43/88 (48%)
Frame = +3
Query: 276 YDALLRWPFAHTVSFTLFDQSSSPDRACNIVESFVPDPTWKNFQRPSKEPDALGFGFPRF 455
+ A+ R H V T+ ++ +P N+ +F +P WK Q +KE + + P F
Sbjct: 800 HKAIKRQLILHAV--TMANEMGNP----NLFITFTGNPEWKEIQEYTKEKNCKWYHAPAF 853
Query: 456 VSHEMLKKRNFVKDDIMFLRVKVDPSKN 539
V+ K ++DD++ + + D S+N
Sbjct: 854 VNAVFKTKFEKLQDDVIGEKTR-DWSRN 880
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1
Query: 1 GQSRRGRRGSWTRCGRRSRACRSTAPARSSGGSRTGPPRWPRPS 132
GQ RG G+ R G + A P RS G GP P PS
Sbjct: 197 GQRSRGTPGASGRPGPQGPAGAPGQPGRSGGAGTPGPQGPPGPS 240
>AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical
protein F52C6.8 protein.
Length = 306
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 432 LGFGFPRFVSHEMLKKRNFVKDDIMFLRVKV 524
+G+G+ +F+S EML K +++ DDI+ V
Sbjct: 97 IGYGWKKFISWEMLAK-DYIIDDIIIAEATV 126
>Z67754-1|CAA91751.1| 483|Caenorhabditis elegans Hypothetical
protein C34E11.1 protein.
Length = 483
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 457 TNLGKPNPNASGSFEGRWKFFHVGSGTNDSTMLQARS 347
+NLG P+P SF G +F + G+ +S +A++
Sbjct: 438 SNLGGPSPKIGNSFAGLDQFMSLSLGSTNSNAPKAKT 474
>U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical
protein K03E6.7 protein.
Length = 431
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 363 IVESFVPDPTWKNFQRPSKEPDALGFGFPRFVSHEMLKKRNFVKDDIMFLRVKVD 527
+ E+FV DPT + F+ P L + HE L+K N D I + V++D
Sbjct: 10 VTETFVSDPTTRQFEEDGHPP--LETRHLNMI-HEELEKLNISTDVINKMEVQLD 61
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = +1
Query: 7 SRRGRRGSWTRCGRRSRACRSTAPARSSGGSRTGPPRWPRPSVR 138
SR GR S R R S+ RS + +RSS GSRT PP R S R
Sbjct: 170 SRSGRTSSSDR-DRHSKR-RSRSRSRSSSGSRT-PPYKSRSSRR 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,689
Number of Sequences: 27780
Number of extensions: 283737
Number of successful extensions: 903
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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