Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e20
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.76 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 389 NVEELPATLERARRIRIWFPK 451
           +V   P+T+ER  +  +W PK
Sbjct: 405 SVTSKPSTMERQTQTEVWIPK 425


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 465 EMLKKRNFVKDDIMFLRVKVDPSK 536
           E  +K   ++DD+  LR+K++P+K
Sbjct: 560 EKFRKLIRIEDDVATLRMKLNPTK 583


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 545 ATIFTRVYFDPQKHNIIFDEIPFLEHFVGYKPWETKS 435
           ATI ++ Y     H II +    L   VG   W +K+
Sbjct: 190 ATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKT 226


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 176 AGVEGGGDQLDAVLTLGLGHLG 111
           +G++G G    A  + G+GH+G
Sbjct: 102 SGMDGMGGYRSASPSPGMGHMG 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,091
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)