Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e19
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    38   0.002
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   0.99 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   4.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   7.0  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.2  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   9.2  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    25   9.2  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.2  

>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +1

Query: 109 DKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFV---YTLNSLHWI 279
           D ++    E L + L  V+ VL  L   +  ++     +++E    ++   Y +NS  + 
Sbjct: 2   DPEYSELFERLNKQLDNVEDVLKPLKDAESIFELAEGKSELEQAKLYITMSYAINSTLYS 61

Query: 280 HLRTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLV 426
             +  GID ++ P+  EL R+K  + K Q+ +      T  V  +   +
Sbjct: 62  FYKLNGIDASERPVMQELQRVKNYISKIQQAEKNVNPKTEAVNTSNAAI 110


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 389 LFWRSFTSCHFNIVAFILSSSSLMGCFVGSMPFVRKCIQCSEFKVYTKNK 240
           +F+RS    HF   AF+++ ++ +  F+   PF +    C  +K+ T+++
Sbjct: 25  MFYRSSRILHFE-EAFVINETNNINQFIPKQPFFKLLDCCILYKLQTEDR 73


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 82  DFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVYTL 261
           DF    L K +D +    +   N  E+    +     +K+Y+K S     +LD FF Y +
Sbjct: 150 DFYIKNLEKTEDLIRTDSHFVLNK-ELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKV 208

Query: 262 NSLH 273
            ++H
Sbjct: 209 TTVH 212


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 73   VLGTFYVLIINCFFFSLIIIN 11
            +L  FY  +I CFFFS ++IN
Sbjct: 1156 MLDGFYQSVI-CFFFSFLVIN 1175


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 91  YGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSL 219
           YG +   K    N ENL++    +++ LD   P+     ++SL
Sbjct: 5   YGSMEHRKKSFRNNENLEQQFHPLREELDNAGPINDRTSELSL 47


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 73  LNWDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPA 225
           ++W    G++A+ K        L   LI+    LDK +  +  YD+M L A
Sbjct: 368 MDWILNNGDMAEVKQ---KRRKLASQLIDAYWNLDKYIRARSVYDRMGLIA 415


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 445 HQRAPVKQLNKRIKFSDNEE 504
           HQR  VK+LN R+K ++ E+
Sbjct: 65  HQRQVVKELNDRVKGTELED 84


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 328 ELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYD 444
           E+   + TM  W   K  Q+R     ++A  + ++ +YD
Sbjct: 142 EIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYD 180


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 82  DFKYG-ELAKDKDFVNNVENLKEN 150
           +++Y  ++AKDK + NN++ L EN
Sbjct: 355 NYEYAKQIAKDKTYSNNLDYLDEN 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,163
Number of Sequences: 5004
Number of extensions: 48943
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)