Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18e19
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 36 0.027
12_02_0269 - 16617292-16618852,16622763-16623562 29 4.1
11_03_0068 + 9564354-9565180,9566658-9568704 28 7.2
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 28 7.2
12_02_0267 - 16588799-16588826,16589333-16590144 27 9.5
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614 27 9.5
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 9.5
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 286 RTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRP-----TVNVEVAKRLVRNGL 438
R G+DP +HPIK E R+ K +D K P TVN + A R + + L
Sbjct: 79 RCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNTQAAARFIGHSL 134
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK-NYDKMSLPAQIELDLFFV 252
+D K + + + DF NN+ +LKE L + +L KL ++ N K L ++ +FV
Sbjct: 23 YDLKEIQFSTEFDFKNNIWHLKEELSCMNALLQKLPNMEALNIQKRELRNKVRELAYFV 81
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 286 RTKGIDPTKHPIKDELLRIKATMLKWQEVKD 378
R KG+D +KDEL + A +LK +++ D
Sbjct: 30 RLKGVDSEILSLKDELSSMNALLLKLEDIDD 60
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = -1
Query: 383 WRSFTSCHFNIVAFILSSSSLMGCFVGSMPFVRKCIQCSEFKVYTKNKSSSI*AGSDILS 204
W S SC IV S + +GSMP RKCI C + ++K S + GS ILS
Sbjct: 207 WESKESC---IVCDARFCSYCVLRAMGSMPEGRKCITCIGQPI-DESKRSKLGKGSRILS 262
>12_02_0267 - 16588799-16588826,16589333-16590144
Length = 279
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK-NYDKMSLPAQIELDLFFV 252
+D + + DF NN+ NLKE L + +L+KL ++ N + L ++ +FV
Sbjct: 23 YDLAEFQFSTQFDFKNNIWNLKEELSCMNALLEKLPDMEALNIQERELRNKVRELAYFV 81
>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
Length = 266
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 286 RTKGIDPTKHPIKDELLRIKATMLKWQEVKD 378
R KG+D +KDEL + A +LK +++ D
Sbjct: 30 RLKGVDNEILSLKDELSSMNALLLKLEDIDD 60
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 184 LPLKKNYDKMSLPAQIELDLFFVYTLNS-LHWIHLRTKGID-PTKHPIKDELLRIKATML 357
L L+K D +IE+ + LN + + ++G+D T +KDEL IKAT+
Sbjct: 1328 LLLEKQVDAEICKKEIEMQKTEIANLNQKISELVENSRGVDLSTYETMKDELQNIKATLR 1387
Query: 358 KWQEVKDRQKR 390
+ +R K+
Sbjct: 1388 ENSAELERTKK 1398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,157
Number of Sequences: 37544
Number of extensions: 256094
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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