Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e17
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    27   2.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   6.6  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   6.6  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   6.6  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.6  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 28  RDATINALHLNLRSK 72
           RDATINAL  NL+SK
Sbjct: 144 RDATINALFYNLKSK 158


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +3

Query: 375 SL*KMVRITVELVRKKAEHHDCLLAPLEEIALHQENIEKIEFLQDWCPKLKILLMQSN 548
           +L +M ++   L+ K    +D  L  L+ + LH    +++E   ++  +LK  +MQ+N
Sbjct: 607 ALTEMEKVIKNLIDKSK--YDLALQSLQSLRLHSILEDEVERFNEYLTRLKKDVMQNN 662


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 154 HTHASKPSAP*VFSSFCFACYEFVTNKQFP 243
           + ++  PSA   F SF F C     NK FP
Sbjct: 57  YIYSEVPSASSKFRSFTFGCVVVYHNKFFP 86


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 154 HTHASKPSAP*VFSSFCFACYEFVTNKQFP 243
           + ++  PSA   F SF F C     NK FP
Sbjct: 57  YIYSEVPSASSKFRSFTFGCVVVYHNKFFP 86


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 154 HTHASKPSAP*VFSSFCFACYEFVTNKQFP 243
           + ++  PSA   F SF F C     NK FP
Sbjct: 57  YIYSEVPSASSKFRSFTFGCVVVYHNKFFP 86


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 160 HASKPSAP*VFSSFCFACYEFVTNKQFPG 246
           H  KP    +FSS C   Y  + +KQ  G
Sbjct: 224 HELKPKRSGLFSSLCLPIYSLLHHKQIFG 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,473
Number of Sequences: 5004
Number of extensions: 48388
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)