Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e17
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-12|AAC78165.1|  374|Caenorhabditis elegans Hypothetical...    30   1.5  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF106575-12|AAC78165.1|  374|Caenorhabditis elegans Hypothetical
           protein K04F1.6 protein.
          Length = 374

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 387 FSTNFSDDFCVFSLLKM-L*TENMITFKQ 304
           FS N+  DFC F LLK+ L   NMI + Q
Sbjct: 2   FSNNYFHDFCAFHLLKLTLKLSNMIFYLQ 30


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 293 SFVFCLKVIIFSVYNIFS--RENTQKSSLKFVENGENHC*ISTKKS 424
           SF+ C  ++I     + S    ++Q+S ++F +NG+N+C   + KS
Sbjct: 13  SFLICTVILIAEYSRVRSPTSPHSQRSPVRFFKNGKNNCSCFSDKS 58


>U97008-1|AAB52310.1|  370|Caenorhabditis elegans Hypothetical
           protein C03G6.10 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 326 SVYNIFSRENTQKSSLKFVENGE-NHC*ISTKK 421
           SV+  F  +N+  SSLK V+N + NHC   TKK
Sbjct: 155 SVHESFEPKNSLPSSLKAVQNNKLNHC--PTKK 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,454
Number of Sequences: 27780
Number of extensions: 275955
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)