Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e14
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...   213   6e-56
Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical p...    28   4.5  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    27   7.9  

>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score =  213 bits (521), Expect = 6e-56
 Identities = 97/149 (65%), Positives = 124/149 (83%)
 Frame = +1

Query: 157 DNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDL 336
           D  W   I  F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL
Sbjct: 41  DAEW-WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDL 99

Query: 337 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASRVLDDEIGCDIIKINSFVRKK 516
           +EG++ V+TTRKTWDPYII+KAR+ +KLLSRSVP+EQA RVL+DEI C+IIKI+S VR K
Sbjct: 100 LEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNK 159

Query: 517 ETFLKRRQRLIGPQGVTLKSIELLTECYV 603
           E F+KRR RLIG  G TLK++ELLT+CYV
Sbjct: 160 ERFVKRRARLIGNDGATLKALELLTQCYV 188


>Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical
           protein Y57G11C.36 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 541 RLIGPQGVTLKSIELLTECYV 603
           RL+GP+G T K +E+ T C +
Sbjct: 131 RLLGPRGTTAKQLEVTTGCRI 151


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
            protein 2, isoformc protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 112  NLIKTNME-VEETNSVDNAWAMKIPKFTPDDNPHGL-LEESKFATLFPKYREQYLKEC 279
            N IK  ++  ++T++ D+ +  ++PK TP D    + L++++F   F     +Y++EC
Sbjct: 880  NKIKVLLKSADDTSNFDSEFTHEVPKLTPIDRLFLMNLDQTEFEG-FSFVNPEYVQEC 936


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,951
Number of Sequences: 27780
Number of extensions: 210442
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)