Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e13
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    32   0.077
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    28   1.3  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   2.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   5.1  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   6.7  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    25   8.8  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   8.8  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +2

Query: 170 QVEISSEEYKEPSAASVVMSGVIQIQPKVILILNRL 277
           QVE  +EE +E  AA+   +GVIQ+Q  V+  L RL
Sbjct: 423 QVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERL 458


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 196 QGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENEEPVRVRRARPSDVPRV 345
           + A  GFGG   S  D T++     Q    GE+EE V       S + ++
Sbjct: 815 KAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEAEAKSPLEKI 864


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 292 NEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCD 426
           N  P  + +  P D  R +   R   R+  P  + PPG+++   D
Sbjct: 216 NNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDTIPPGASMARSD 260


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 259 SNSKQVMVQGENEE---PVRVRRARPSDVPRVIRFVREHVRQTWPEVSAP 399
           +++++    G N +   PV V RA    + R+I  + EH    WP   +P
Sbjct: 548 ASAEEAKESGNNNKYTRPVMVHRAILGSLERMIAILTEHYAGKWPFWMSP 597


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 118 ILNRHTMSSLPGFFKVISGRNLVRRVQGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENE 297
           +LN+ TMS L    KV S  +++  + G      G V+  S  T++ S  KQ     EN 
Sbjct: 69  LLNKRTMSGLVHIPKVSSSYSVINTLNGMIGNLFG-VKQASTLTEA-SEQKQ-----ENA 121

Query: 298 EPVRVRR 318
            PV + R
Sbjct: 122 IPVLLTR 128


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 419 KTRFDPGGADTSGQVCRTCSRTNRITRGTSDGRARRTLTGSS 294
           K  F P  A+   ++ R  SR+  +TRG         + G+S
Sbjct: 311 KIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGAS 352


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 350 DLSVNMSDKPG-QRYQLLQDQIWFCA 424
           D +V +  +PG QR++ L D IW C+
Sbjct: 132 DYTVLLQLRPGTQRFKFLVDGIWCCS 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,006
Number of Sequences: 5004
Number of extensions: 46558
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)