Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e13
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0820 - 21749477-21749866,21751192-21751590                       30   1.7  
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    29   3.0  
11_03_0128 - 10437407-10438049,10438097-10438272                       29   3.9  
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718     28   6.9  

>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = -1

Query: 478 LAFRLTLNGLEPTP*PRNRTKPDLILEELIP 386
           L FR+ L GL P P  RNR K D   EEL P
Sbjct: 219 LPFRVLLKGLLPHPLLRNRVKQD--FEELFP 247


>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 419 KTRFDPGGADTSGQVCRTCSRTNRITR 339
           K  +D  G DTSG VCR+ S  N I +
Sbjct: 8   KKGWDSNGMDTSGSVCRSSSDINYINQ 34


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 476 CFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTCSR 357
           C +A I  P     A++ H  R     A TS   CRTC R
Sbjct: 109 CPAAGIHRPDDGHRARQRHLPRRSRSTASTSSTTCRTCCR 148


>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
          Length = 756

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -3

Query: 536 GQTDIPKARP--RICDQPLLISCFSANIEWP*ANALAKKSHKTRFDPGGADTSGQVCRTC 363
           G T  P AR   R  D  LLI     + +WP     A  SH T    GG   SG  C   
Sbjct: 224 GMTPDPSARHAHRQGDLDLLIKRLDDHEKWPQGTVKALDSHVTCEVYGGTGHSGNDCPE- 282

Query: 362 SRTNRITRGTSDG 324
           +R   +  G ++G
Sbjct: 283 TREEAMYMGNNNG 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,888
Number of Sequences: 37544
Number of extensions: 335881
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)