Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e12
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    29   2.0  
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    28   3.4  

>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 229 GNTTSYWFSLIYISSA-FAAYIYVLYSMFLTVSTFIIKRRSAQICCICTS 83
           GN++ Y+F +  ++SA ++ Y  +L+ +   + TF+    + Q+C I  S
Sbjct: 6   GNSSKYFFPVFTLNSAYYSDYYAMLFIIIHILLTFLCCLLTIQVCLIINS 55


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 304 QSRIDFR*IDSGVELXXXXXXXXRHGNTTSYWFSLIYISSAFAAYI 167
           +SR+D    DSGVE+          G +  Y F + +I S   A+I
Sbjct: 28  KSRLDSHGQDSGVEIISNKPYTDGPGGSGQYTFKIYHIGSRIPAWI 73


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 304 QSRIDFR*IDSGVELXXXXXXXXRHGNTTSYWFSLIYISSAFAAYI 167
           +SR+D    DSGVE+          G +  Y F + +I S   A+I
Sbjct: 28  KSRLDSHGQDSGVEIISNKPYTDGPGGSGQYTFKIYHIGSRIPAWI 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,159
Number of Sequences: 27780
Number of extensions: 197357
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)