Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e12
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.79 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.4  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   9.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 89   TNTTYLSGSSFDYKCRNCQKHTIQHID 169
            TNTT  SGSS D++ R   +H    ID
Sbjct: 1314 TNTTVSSGSSEDHR-RPLSEHIYSSID 1339


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 211 WFSLIYISSAFAAYIYVLYSMF 146
           WF L  ISS    YI+++++ F
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQF 189


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 211 WFSLIYISSAFAAYIYVLYSMF 146
           WF L  ISS    YI+++++ F
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQF 189


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 211 WFSLIYISSAFAAYIYVLYSMF 146
           WF L  ISS    YI+++++ F
Sbjct: 168 WFFLDLISSIPLDYIFLIFNQF 189


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 114 LRLIINVETVKNILYST*IYAA 179
           ++ ++NV  V  ++Y + IYAA
Sbjct: 1   MKFLVNVALVFMVVYISYIYAA 22


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 246 FLRLRSSTPESIHRKSILD 302
           F  + S +P+++H ++I+D
Sbjct: 358 FCNIVSCSPQTVHPETIID 376


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 401 CGFLNFNQFKVLNSLIHC 454
           C F  +  F  LN++++C
Sbjct: 143 CNFKAYCLFSFLNTIVYC 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,795
Number of Sequences: 438
Number of extensions: 2465
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)