Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18e09
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 1.7
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 27 2.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 3.8
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 3.8
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 3.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.1
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 6.7
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 6.7
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 8.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.9
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 8.9
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 470 SGEEEVVERSSQTNENSPFTPEEEATVKDEDIDKFCDELNEEDNEQYES 616
S EEE V+ +T + +E +K+E+++ +E EE+ YES
Sbjct: 330 SSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGE-EEEEEEEVPNYES 377
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 467 DSGEEEVVERSSQTNENSPFTPEEEATVKDEDIDKFCDELNEEDNE 604
D ++EVVE S+ NEN P + D + F D E+ N+
Sbjct: 772 DDDDDEVVEWVSRGNENK--YPRSNFFINGSDREDFSDSEEEDGND 815
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +2
Query: 467 DSGEEEVVERSSQTNENSPFTPEEEATVKDEDIDKFCDELNEEDNEQYE 613
+ EE+++E ++NE S E + K++D +K ++ + ++ E E
Sbjct: 4006 EPNEEDLLETEQKSNEQSAANNESDLVSKEDD-NKALEDKDRQEKEDEE 4053
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +3
Query: 168 KIFNSTV*RKLQENIISLKAVFYQTQEVKKLTDQVLLNRRVLEISIWATQLSKRQKTEKK 347
++F ST L+ +S K YQ + V+ D++ L +RVL +I + +K E+K
Sbjct: 13 QLFLSTDLESLEPTCLS-KDTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEK 71
Query: 348 TSVLQIIKKT 377
L+ + T
Sbjct: 72 GFSLEALVAT 81
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 467 DSGEEEVVERSSQTNENSPFTPEEEATVKDEDIDK 571
D E++ +ER Q +N P EE+A +K+++++K
Sbjct: 458 DEIEQDEIERVLQKYDNIPLLNEEQA-LKEKNVEK 491
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 533 EEEATVKDEDIDKFCDELNEEDNEQYESW 619
+EE T+ D + F D EE+ QYE +
Sbjct: 433 DEEETIDDAKSEMFVDLSEEEEVRQYEEY 461
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 491 ERSSQTNENSPFTPEEEATVKDE-DIDKFCDELNEEDNEQYES 616
E+ +Q E + E+ A++ E + + F DE++EE+ + YE+
Sbjct: 24 EKENQKLERNGPANEDLASISSESEFNGFEDEIDEENEDTYET 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 536 EEATVKDEDIDKFCDELNEEDNEQYESWV 622
EE K D D+ +EL +E N E WV
Sbjct: 867 EELESKMSDFDQSVEELQDEMNSIKEDWV 895
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 397 FISGVPCVFFIICSTEVFFSVFCRLL 320
FI + C+ F++ ST+ F V RLL
Sbjct: 553 FIHIMVCILFLLLSTQRFMEVSARLL 578
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 476 EEEVVERSSQTNENSPFTPEEEATVKDEDIDKFCDELNEEDNEQYES 616
+++ V S + +S + EEE T +ED + DE E + ES
Sbjct: 71 KKKAVAASEDSESDSESSEEEEETESEED-SEVSDESESESESESES 116
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 403 YYFISGVPCVFFIICSTEVFFSVFCRLLSCVAHIDISKTLLFNS 272
+YFI GV F C T + +V VA + ++ L NS
Sbjct: 94 FYFIRGVLACFSAFCETNLILAVARNFNRAVA-LHLTSVLFVNS 136
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 476 EEEVVERSSQTNENSPFTPEEEATVKDEDIDKFCDEL 586
+E+ V SS N N+PF + V D ++ D+L
Sbjct: 19 QEDGVYTSSLHNSNNPFLAPKTERVADPVMESMADDL 55
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +2
Query: 473 GEEEVVERSSQTNENSPFTPE----EEATVKDEDIDKFCDELNEEDNEQ 607
G+E S + P P+ + +DEDID ++L +D E+
Sbjct: 95 GQEATTSPSLSASHEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEE 143
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 237 QTQEVKKLTDQVLLNRRVLEISIWATQLSKRQKTEKKTSVLQIIKKTQGT 386
+T KKLT + + RR+ Q +R + EK ++ +++K+ T
Sbjct: 187 ETSGRKKLTPEEMALRRIENARRRKNQSERRLEEEKMETINRLLKRQSNT 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,487
Number of Sequences: 5004
Number of extensions: 30152
Number of successful extensions: 143
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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