Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e09
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.11 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.4  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 185 SVKKAARKYN*PKSCLLSNSRGQEINRSSTI 277
           S KK+  +YN  K+ ++S S+G  IN S  I
Sbjct: 216 SAKKSLTEYNNLKAMVVSGSKGSNINISQVI 246


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 RNINMGNTAKQTTKNRKKNFCTTNNKEDTGHS 388
           +N N+ NT  Q   N+K N    NN+++   +
Sbjct: 419 QNDNIQNTNNQNDNNQKNNKKNANNQKNNNQN 450


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 518 YFHLSGCFSRPLLPLH 471
           YF + G F  PL+P+H
Sbjct: 148 YFIMHGDFKDPLIPVH 163


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 518 YFHLSGCFSRPLLPLH 471
           YF + G F  PL+P+H
Sbjct: 148 YFIMHGDFKDPLIPVH 163


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 518 YFHLSGCFSRPLLPLH 471
           YF + G F  PL+P+H
Sbjct: 199 YFIMHGDFKDPLIPVH 214


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 518 YFHLSGCFSRPLLPLH 471
           YF + G F  PL+P+H
Sbjct: 148 YFIMHGDFKDPLIPVH 163


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 204 ENIISLKAVFYQTQEVKKLTDQVLLNRRVLEIS 302
           +NII    V   T   K+L+  VLL  + +  S
Sbjct: 285 KNIIDYYLVLENTDHTKQLSHDVLLRAKQIGFS 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,741
Number of Sequences: 438
Number of extensions: 1925
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)