Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e08
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-10|AAB66205.1|  340|Caenorhabditis elegans Hypothetical...    35   0.057
U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis ...    32   0.40 
AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical ...    32   0.40 
Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   2.1  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical...    29   2.8  
Z70751-3|CAA94752.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z70750-17|CAA94749.1|  529|Caenorhabditis elegans Hypothetical p...    29   3.8  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC006674-10|AAF39937.1|  103|Caenorhabditis elegans Hypothetical...    28   6.6  

>AF016684-10|AAB66205.1|  340|Caenorhabditis elegans Hypothetical
           protein F45C12.6 protein.
          Length = 340

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +1

Query: 310 KTLSELGLKTGETLIVEEKAVTKINATQTETRPSQNG----VESHETIESCRPGILMKKV 477
           +T +E   + G      E+ + +I  T T    S NG    VES  +++  +PG+ + KV
Sbjct: 41  RTSNEKQFQVGMDFYWNEEEIERITGTVTLCYSSGNGFGSWVESETSVDLSKPGLTIGKV 100

Query: 478 VPSDNSCLFTSIGFVLNGSIDTSVHTLMRQIIAMEVASD 594
             ++   ++TS  + L       +H L  ++ +    SD
Sbjct: 101 FDTNFHVMYTSYRYSLTIHRSHCLHRLYEKMFSPSEQSD 139


>U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis
           zeste white 10 (drosophila) homolog protein 1 protein.
          Length = 778

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 242 ISDMLDKNIFNSPTVLSEVKSFKTCCPFLLLILNTNADIFT*LVFFRSIIYLYFNWVTKC 63
           +S+++D+   +SP +L+E+KS    C  L+  L +  ++   L+  RS       W T  
Sbjct: 64  LSNLIDQTAKDSPEMLAEIKSQAQSCENLVEFLQSMKNVEEQLIIMRSKTTNRVEWGTAI 123

Query: 62  MSISTNKLRTNM 27
           ++       TNM
Sbjct: 124 LACKDFLNDTNM 135


>AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical
           protein Y119D3B.16 protein.
          Length = 357

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 159 KRTASFERFDLRKYCGRIEDVFVQ 230
           ++   FE+FD++ +C + ED++VQ
Sbjct: 163 RKKQGFEKFDIKTFCAKAEDIYVQ 186


>Z32681-5|CAA83606.1|  341|Caenorhabditis elegans Hypothetical
           protein F56F3.4 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/79 (22%), Positives = 39/79 (49%)
 Frame = +1

Query: 166 QQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGE 345
           +Q++ ++  + TV  LK  +   +++   R  +L     K ++  DN+KT+++ G+ +  
Sbjct: 32  KQIVVEMKDKETVSILKNRIEQETEVLTNRQVLLF----KGMELKDNNKTMTDCGINSDA 87

Query: 346 TLIVEEKAVTKINATQTET 402
            + +  K  T I    T T
Sbjct: 88  KITMNVKMSTGIVTNPTTT 106


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 352 IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSC 498
           I+E++ V+KI   Q+          S+ +  SC+PG +   V   D SC
Sbjct: 146 IIEKQRVSKILKVQSLPSSPALSTVSYASFSSCQPGPITSPVSYRDKSC 194


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 352 IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSC 498
           I+E++ V+KI   Q+          S+ +  SC+PG +   V   D SC
Sbjct: 264 IIEKQRVSKILKVQSLPSSPALSTVSYASFSSCQPGPITSPVSYRDKSC 312


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = +1

Query: 109 NTSQVKMSALVFKIKSKNGQQVLKD--LTSESTVGELKMFLSSISDISIERVNILCGYPP 282
           + SQ  +  LV +   KN   V KD  +T+ S       +L S+ ++ I+R + LCG   
Sbjct: 187 DNSQTPVDTLVMQSIEKNELAVNKDEEVTNISNEFGCLDYLESLPELRIQRCSKLCGDIV 246

Query: 283 KALDTSDNSKTLSELGLKTGETLIVEEKAVTKINATQTE 399
           + +  +  S +     + TG+     +   T  N+  +E
Sbjct: 247 QVVSKTTGSYSTYNYTIYTGKFNNTNKVYCTSCNSVTSE 285


>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
            protein Y116A8C.36 protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 322  ELGLKTGETLIVEEKAVTKINATQTETRPSQNGV 423
            ELG KTG+ +IV +K+  +  +   E  PS++G+
Sbjct: 1055 ELGFKTGDVIIVTDKSEAEWWSGHREQDPSKSGL 1088


>Z70751-3|CAA94752.1|  529|Caenorhabditis elegans Hypothetical
           protein F11A3.2a protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 82  KYK*IIERKNTSQVKMSALVFKIKSKNGQQVLKDLTSE 195
           K K   E+ N ++VK+  ++  +KS+N QQV+   T+E
Sbjct: 16  KLKETFEKLN-NEVKLLGMILGVKSENNQQVVPPTTAE 52


>Z70750-17|CAA94749.1|  529|Caenorhabditis elegans Hypothetical
           protein F11A3.2a protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 82  KYK*IIERKNTSQVKMSALVFKIKSKNGQQVLKDLTSE 195
           K K   E+ N ++VK+  ++  +KS+N QQV+   T+E
Sbjct: 16  KLKETFEKLN-NEVKLLGMILGVKSENNQQVVPPTTAE 52


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 277 PPKALDTSDNSKTLSELGLKTGETLIVEEKAVTKINATQTETRPSQNGVESHET 438
           P    D  +   T  ELGL+  E L++EE+     +  +  T  ++N  E H T
Sbjct: 675 PDMGEDDIELIDTPVELGLEATENLVIEEEIEALTSVDEVSTPSTENIQEVHTT 728


>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = -1

Query: 272 PHNILTLSMLISDMLDKNIFNSPTVLSEVKSFKTCCPFLLLILNTNADIFT*LVFFRSII 93
           PH I  L++LI   L         +LS + ++     F+ ++L  + +I T L+   + +
Sbjct: 276 PHEIGDLAVLIDSGLSMCTALILNLLSALTAYAGL--FIAIVLGRDEEIETILLAITAGM 333

Query: 92  YLYFNWVTKCMSISTNKLRTNMY 24
           +LY  WV    S++T  +  N+Y
Sbjct: 334 FLYVAWVDMA-SLNTLIVFNNLY 355


>Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical
           protein C54E10.3 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 584 TSIAIICLINVCTDVSMLPFKTKPMLVKRHELSEGTTFFINIPGRHDSIVS 432
           T+  +   + +  D+S+L +KTK  +V ++E+S  T+   +    H  IVS
Sbjct: 204 TTFFLPLTLTIFADISVLTWKTKITMVTQNEISSKTSDMGSRKHSHIKIVS 254


>AC006674-10|AAF39937.1|  103|Caenorhabditis elegans Hypothetical
           protein K12H6.8 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 610 HXMCRGHWPPP 578
           H MC G WPPP
Sbjct: 92  HIMCEGEWPPP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,280
Number of Sequences: 27780
Number of extensions: 271491
Number of successful extensions: 843
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)