Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e08
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 466 MKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQI 570
           +K+   SD S LFT +     GS DTS++ +++++
Sbjct: 842 IKRTERSD-SALFTCVATNAFGSDDTSINMIVQEV 875


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 PGILMKKVVPSDNSC 498
           PG ++KK+ P + +C
Sbjct: 258 PGTILKKLCPQEEAC 272


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 PGILMKKVVPSDNSC 498
           PG ++KK+ P + +C
Sbjct: 173 PGTILKKLCPQEEAC 187


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 PGILMKKVVPSDNSC 498
           PG ++KK+ P + +C
Sbjct: 492 PGTILKKLCPQEEAC 506


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 304 NSKTLSELGLKTGETLIV 357
           N + +  LG+ TGE+++V
Sbjct: 60  NMENVDPLGIHTGESIVV 77


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 343 ETLIVEEKAVTKINATQTETRPSQNGVES 429
           ++LIV   A+ ++N +++ T P +N  +S
Sbjct: 293 DSLIVLTSALQEMNKSKSITEPPKNCADS 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,248
Number of Sequences: 438
Number of extensions: 3330
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)