Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e07
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...   134   6e-32
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    81   5e-16
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    81   5e-16
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    30   1.5  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      30   1.5  
AF039718-6|AAB96743.1|  249|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF357877-1|AAK27715.1|  835|Caenorhabditis elegans receptor-medi...    28   6.2  
AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor med...    28   6.2  
AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor med...    28   6.2  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score =  134 bits (323), Expect = 6e-32
 Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
 Frame = +1

Query: 181 PAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWI 360
           PA A +G+  G+ +WRI  F   PV + D G FY GD+YI L    D      WD+H+W+
Sbjct: 8   PALAEIGKKNGLLVWRINKFVLEPVPEVDHGVFYIGDAYIALYQKYDG----CWDVHFWL 63

Query: 361 GRESTQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNPSGF 540
           G+ ++ DE G AAI TV +DD  GG   QHRE   +ES LFLSYF   + Y+ GG  SG+
Sbjct: 64  GKNASTDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYESGY 123

Query: 541 NHVVTNAGAQK-RMFQVKGKRDVRVRQVD 624
            HV       K  +F  KGKR+VR  +V+
Sbjct: 124 RHVDDQFKNWKPHLFHCKGKRNVRCTEVE 152


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +1

Query: 193 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 372
           +VG   G+ +W I+NF P  + +   G+FY  D+Y++L+TT +    L   I YW+G  +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562

Query: 373 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGF 540
           + D+   +A+  VGL +         RE M  E+  FL+ F   + Y+EGG   SGF
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF 619


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +1

Query: 193 NVGRTAGVQIWRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIHYWIGRES 372
           +VG   G+ +W I+NF P  + +   G+FY  D+Y++L+TT +    L   I YW+G  +
Sbjct: 503 DVGSDEGMWVWEIENFYPSIMDEAFHGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHA 562

Query: 373 TQDESGAAAILTVGLDDKFGGAAVQHRETMGHESALFLSYFQTPLNYLEGGNP-SGF 540
           + D+   +A+  VGL +         RE M  E+  FL+ F   + Y+EGG   SGF
Sbjct: 563 SLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGF 619


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 206 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 60
           V P   KAGW +      L D+ + G      ++ V  +  PS+ K+RH
Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 206 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPSKTKRRH 60
           V P   KAGW +      L D+ + G      ++ V  +  PS+ K+RH
Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767


>AF039718-6|AAB96743.1|  249|Caenorhabditis elegans Hypothetical
           protein T12F5.1 protein.
          Length = 249

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 100 TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQK 264
           T  K QE+ GP+    D+   D AK   ++    R  G      QNF+ I + +K
Sbjct: 171 TPEKGQEVEGPVEEFDDETNEDVAKAR-SYNPAARKLGGSSKSDQNFQKINLRKK 224


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 VGRTAGVQIWRIQNFEPIPVAQKDIGKFYKG 288
           VG  AG Q +R++   P+P A   +G  Y G
Sbjct: 259 VGYKAGEQTYRVKGSIPVPFAVPTLGNCYSG 289


>Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical
           protein W04G3.2 protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 252 GYWFEVLYSPYLHTG-CSADIGKSRVDLSFVTGVFI 148
           G W++V+YSP + TG CS    K   D    TG  +
Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437


>AF357877-1|AAK27715.1|  835|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform II protein.
          Length = 835

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 152 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 253
           +TPV K+R+ + +P++A++P+ +    R S   P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255


>AC006695-13|AAF39978.1|  786|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform a protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 152 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 253
           +TPV K+R+ + +P++A++P+ +    R S   P
Sbjct: 173 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 206


>AC006695-11|AAF39979.1|  835|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform b protein.
          Length = 835

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 152 KTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQYP 253
           +TPV K+R+ + +P++A++P+ +    R S   P
Sbjct: 222 ETPVPKMRAQQQVPVAADRPIRRLSIARASMMTP 255


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 223 WRIQNFEPIPVAQKDIGKFYKGDSYIILRTTSDNRNNLSWDIH 351
           W + NFE +   +  + K YK + + I++     RN L+ +IH
Sbjct: 332 WDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIH 374


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 149 IKTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQY 250
           ++T +T L  +R LP  +      YGEYR S  Y
Sbjct: 103 LRTFLTTLNPSRSLPEPSNMTTKAYGEYRPSLSY 136


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 149 IKTPVTKLRSTRLLPMSAEQPVCKYGEYRTSNQY 250
           ++T +T L  +R LP  +      YGEYR S  Y
Sbjct: 153 LRTFLTTLNPSRSLPEPSNMTTKAYGEYRPSLSY 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,452
Number of Sequences: 27780
Number of extensions: 329601
Number of successful extensions: 928
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)