Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e06
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    31   0.15 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.0  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    26   5.5  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   9.7  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   9.7  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 372 YRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGLET 551
           Y T+  T+  +IPK E+     SI     + D+ +  +++    M+  I+   ++K LE 
Sbjct: 3   YETNTPTEESIIPKHEDGEEYNSIYLSRFEKDISISQTLDFSQFMQTQILLTAKRKALEL 62

Query: 552 SKD 560
             D
Sbjct: 63  GDD 65


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 441 INTIGNKADVILPNSIEMPPLMK 509
           I T+ N A+++ PN +EM P +K
Sbjct: 5   IRTVHNMAELLHPNKVEMKPFLK 27


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 640 YCGLFIGFWLSCLFYL 593
           Y G  I FWLSC  YL
Sbjct: 158 YIGWAIAFWLSCFKYL 173


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 209 CRQDYCQICFLALPRT*FY 265
           C +D C I  L +PRT FY
Sbjct: 484 CLRDLCNIFALPVPRTPFY 502


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 220 ILPTPKFFRLPTISQSDF--PLKSVVLPTYFIT 128
           I P P F   PTIS+S+    L+S+++  Y  T
Sbjct: 19  ITPEPTFETQPTISKSEIFETLRSILVTKYLTT 51


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 348 KLPNITEIYRTSYKTDYQLIPKR 416
           +L ++ ++Y   YKT+Y+ + KR
Sbjct: 252 ELSSMRKVYFVKYKTEYEFLQKR 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,581
Number of Sequences: 5004
Number of extensions: 53310
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)