Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e06
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001182-1|AAH01182.1|  218|Homo sapiens mitochondrial ribosomal...    49   2e-05
EF036486-1|ABO65072.1|  176|Homo sapiens mitochondrial 28S ribos...    30   6.4  

>BC001182-1|AAH01182.1|  218|Homo sapiens mitochondrial ribosomal
           protein S34 protein.
          Length = 218

 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
 Frame = +3

Query: 174 LWEIVGSLKNFGVGRIIVRSVFL-RYPEPSFMKIVKVQTCPD---XXXXXXXXXXXKTFR 341
           L +++G L  FG+GR++ R  +L ++ EP + ++ +V+  PD               TF+
Sbjct: 64  LLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVR--PDYTAQNLDHGKAWGILTFK 121

Query: 342 GQKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFII 521
           G+      EI    Y  D++L+PK EE    E+        +  L  S+  PPL++  II
Sbjct: 122 GKTESEAREIEHVMYH-DWRLVPKHEE----EAFTAFTPAPEDSLA-SVPYPPLLRAMII 175

Query: 522 KDHEKKGLETSKDFMM 569
            + +K G  ++++ M+
Sbjct: 176 AERQKNGDTSTEEPML 191


>EF036486-1|ABO65072.1|  176|Homo sapiens mitochondrial 28S
           ribosomal protein S34 protein.
          Length = 176

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
 Frame = +3

Query: 174 LWEIVGSLKNFGVGRIIVRSVFL-RYPEPSFMKIVKVQTCPD---XXXXXXXXXXXKTFR 341
           L +++G L  FG+GR++ R  +L ++ EP + ++ +V+  PD               TF+
Sbjct: 64  LLQLLGRLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVR--PDYTAQNLDHGKAWGILTFK 121

Query: 342 -------GQKLPNITEIYRTSYKTDYQLIPKREE 422
                  G+      EI    Y  D++L+PK EE
Sbjct: 122 DASFSSSGKTESEAREIEHVMYH-DWRLVPKHEE 154


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,786,251
Number of Sequences: 237096
Number of extensions: 1717547
Number of successful extensions: 2576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)