Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e06
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-2|CAA84334.2|  228|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z34802-2|CAA84334.2|  228|Caenorhabditis elegans Hypothetical
           protein M88.2 protein.
          Length = 228

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
 Frame = +3

Query: 120 TGTVIKYVGR-TTDFKGKSLWEIVGSLKNFGVGRIIVRSVFLR-YP-EPSFMKIVKVQTC 290
           +  +I++VG      +GK L+EI+  L+NFGVGR++ ++ + R +P  PS+MKI++ +  
Sbjct: 2   SSNLIRFVGNHDIASEGKFLFEILSQLRNFGVGRLVTKNEWTRKWPNNPSYMKILRAEPG 61

Query: 291 PDXXXXXXXXXXXKTFRGQKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADV 470
            D             FRG+ L  + E  +   ++D+QL+ K +E     S   +    D+
Sbjct: 62  MDRWLFEGKVYAEWVFRGKNL-GVYEFSKDLNRSDWQLVHKHQEKSYTSSTTPM---QDL 117

Query: 471 ILPNSIEMPPLMKLFIIKDHEKKGLE 548
           +LP+S  +PPL      K   K GL+
Sbjct: 118 VLPDSFPLPPLQVHLSQKSARKNGLD 143


>Z81115-3|CAB03293.2|  486|Caenorhabditis elegans Hypothetical
           protein T05D4.3 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 651 IVNFIVGCSLAFGYLVCSIWTLIIT 577
           ++N IVGC + F  +V S  TL++T
Sbjct: 267 VINLIVGCFIYFATVVLSAITLVVT 291


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 639 IVGCSLAFGYLVCSIWTLI 583
           IVGC+L +G +VCS+W ++
Sbjct: 17  IVGCAL-YGLIVCSMWRMV 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,143
Number of Sequences: 27780
Number of extensions: 289693
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)