Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e05
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   0.92 
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   2.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   4.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   4.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.5  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    24   8.6  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    24   8.6  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 351 CHDPVFRPH-MYCCSCCPERDHGEC 280
           C   +  PH + CC+ CP+RD   C
Sbjct: 238 CKKCLLAPHEVICCAFCPDRDGAFC 262


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 383 CIVSKSCN---WFVVMTQFFGLICTVVLAALNGITGN 282
           C++S   N   WF++   FFGL   ++L A      N
Sbjct: 328 CLLSDRTNIRGWFIIGMNFFGLAGFIILLATTNSAAN 364


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 114 ALAKQIVASPVAGQLSKMVRRAASIFNREFGRYPN 218
           + AK   ++    Q+S+ VR+  SIFN  F  Y N
Sbjct: 621 SFAKSDSSNATESQISESVRKGISIFNLLFIVYKN 655


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 74  LCPNEKGWRENINQTN 27
           LC N++ WR NI+Q++
Sbjct: 259 LCANKRSWRLNISQSS 274


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 411 LKFIYWNVPLYXXXXXXXXRCHDPVFRPHMYCCSCCPER 295
           LKF+Y N  L         + ++  ++P ++CC+   ER
Sbjct: 33  LKFLYTNKNLSQDSLVSKLKGNEAFYKPFLFCCAKKIER 71


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 251 FSILNIVSRMIIRVPSELPIEDTGCSAHHL 162
           F I +IV+R+ +R    +P+E+     +HL
Sbjct: 491 FDIASIVARLFLRSRKLIPLEEECAVQYHL 520


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 290 TGNVLNNQF*RASFSILNIVSRMIIRVPSELPIEDTGCSAHHLTQ 156
           T ++ N     AS     +V  ++  V   +P + TGCS H L Q
Sbjct: 752 TPSIANQSSSIASLQFGRMVDSLVGPV-QPIPAQTTGCSVHSLQQ 795


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 231 YDIQDAKRRSSKLIVEDIPRDPVQGSKNNSTYEAEKLGHD 350
           Y  Q +K++SSK   ED   D    + ++S   AEK   D
Sbjct: 217 YSTQSSKQKSSKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,647
Number of Sequences: 5004
Number of extensions: 32030
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)