Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18e05
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845... 31 0.51
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 2.7
06_03_0784 - 24557089-24557198,24557296-24560725 28 3.6
08_02_0648 - 19694538-19696569,19697151-19697998 27 6.3
06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537... 27 6.3
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 27 8.3
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 8.3
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984... 27 8.3
>11_06_0506 -
24380469-24380632,24381737-24383893,24384488-24384541,
24384543-24384597,24384914-24384916,24385192-24385231,
24385576-24385632,24388124-24388412,24389764-24389771,
24390633-24390688,24391207-24391488,24391651-24391811,
24391887-24392121,24392860-24392943,24393022-24393117,
24393333-24394055,24396523-24396987
Length = 1642
Score = 30.7 bits (66), Expect = 0.51
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 222 HPGYDIQDAKRRSSKLIVED--IPRDPVQGSKNNSTYEAEKLGHDNEPVTRLRDDTTEHS 395
HP + DA R+ ++I + P+ V ++ N + L +NE VT L + HS
Sbjct: 151 HPDEKVVDASARALRMIYQSKLAPKFDVNNNEKNMEFLLTLLNSENENVTELAANIISHS 210
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 341 QFFGLICTVVLAALNGITGNVLNNQF*RASFSILNIVSRMIIRVPSELPIEDTGCSAHHL 162
+F L+C +L+A + + + +A + ++M++ V SELP + H +
Sbjct: 1842 RFRELVCKHILSATDNSNSEKVPSGTGKAILKVSEDQTQMLLNVISELPNNELLLQKHFM 1901
Query: 161 TQLSSHRRS 135
LSS RS
Sbjct: 1902 AVLSSVWRS 1910
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 197 PIEDTGCSAHHLTQLSSHRRS 135
P+ D+ CS HHL LS H S
Sbjct: 628 PLSDSLCSLHHLRMLSVHPHS 648
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 135 ASPVAGQLSKMVRRAASIFNREFGRYPNYHPGYDIQDAKRRSSKLIVEDIPR--DPVQGS 308
AS + G ++ ++ + +++ E+G+ H G + RS + +ED+ + +P Q
Sbjct: 6 ASTLMGVMNPLLGKLSTLLEEEYGKLKGLHSGIASLRDELRSMEAALEDLSQLEEPSQQV 65
Query: 309 KNNSTYEAEKLGHDNE 356
K ++ +L +D E
Sbjct: 66 K-EWMHQLRELSYDIE 80
>06_01_1192 +
10249316-10249431,10251263-10251279,10251890-10253797,
10253880-10254492,10255390-10255392,10257635-10257713,
10258177-10258236,10258536-10258586,10258800-10258948,
10260937-10260985
Length = 1014
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 327 EAEKLGHDNEPVTRLRDDTTEH 392
E E H N PV R+R+D ++H
Sbjct: 827 EGEVRTHPNHPVLRMREDRSDH 848
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 213 PNYHPGYDIQDAKRRSSKLIVEDIPRDPV 299
P HP + +Q S K +P+DPV
Sbjct: 366 PMSHPSFSLQQVLEMSEKWRTRPLPKDPV 394
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 203 ELPIEDTGCSAHHLTQLSSHRRSYDLLSQSLHV 105
EL + G S H HRRS+ LSQSL V
Sbjct: 197 ELDADFEGSSRRHDNLSFFHRRSFQNLSQSLRV 229
>03_02_0907 -
12297523-12297891,12298051-12298200,12298356-12298463,
12298693-12298815,12299039-12299312,12304895-12304973,
12305222-12305256,12305372-12305429,12306185-12307274
Length = 761
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 239 NIVSRMIIRVPSELPIED-TGCSAHHLTQLSSHRRSYDLLSQSLHVVYISCY-*DVRLC- 69
N++ + +VP ELP++D AH ++S R Y + + V +S + D C
Sbjct: 206 NLIHVPLPQVPDELPVDDQVNRGAHRCVKVSGGRLMYVQIHGNPVVPVVSTWLLDESTCS 265
Query: 68 PNEKGWRENIN 36
P E W ++
Sbjct: 266 PGEWEWNPQLS 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,439
Number of Sequences: 37544
Number of extensions: 198416
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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