Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e05
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 139 EATICLAKACTSSTLAVIRMYDSVLMR 59
           E  +C+A A    + A  RM+D ++ R
Sbjct: 164 ERNVCIAAAVKVPSAADDRMFDDIIQR 190


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 280 TFPVIPFRAARTTVHMRPKNWVMTTNQLHDLETIQRNIPIDK 405
           T P +P  A      +  K+ +     L+D  T++R + +D+
Sbjct: 441 TMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAVDR 482


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 139 EATICLAKACTSSTLAVIRMYDSVLMR 59
           E  +C+A A    + A  RM+D ++ R
Sbjct: 254 ERNVCIAAAVKVPSAADDRMFDDIIQR 280


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 227 RMIIRVPSELPIEDTGCSA 171
           R I+++PS  P    GCS+
Sbjct: 879 RAILKIPSYKPASTPGCSS 897


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 237 IQDAKRRSSKLIVEDIPRDPVQGSKNNSTYEAEKLGHDNEPV 362
           ++ +++R   + ++ +  DP+   K  S     KL H N  V
Sbjct: 194 LEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASV 235


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 237 IQDAKRRSSKLIVEDIPRDPVQGSKNNSTYEAEKLGHDNEPV 362
           ++ +++R   + ++ +  DP+   K  S     KL H N  V
Sbjct: 194 LEGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASV 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,248
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)