Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e01
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   2.0  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   4.5  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   4.5  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   4.5  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 131 IKYRRCKLNSVNIKKHLESI----TKYKQNPKHKTIEQLHYV*FPASSLFPLT*DATEAF 298
           IK+++C +N V + K+   I      +K+  K K + QL    F   ++  L     +  
Sbjct: 355 IKFQKCDMNIVMLTKYFNEIWAVFIAHKEGEKEKVVAQLSGFSFYCKAIEFLQMLCQKRI 414

Query: 299 GNFNSKGLSSSIAVTL 346
             F + GL++    TL
Sbjct: 415 SRFKNGGLTAEAYKTL 430


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 307 QQQRAQLFHSCYLMTCSISCLDNYDSILGPAGSHSEVSSCLDKY 438
           + Q AQ++    ++ CS+    N+ S L P   H+  S+C++ +
Sbjct: 626 ETQEAQVYKG--MLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPF 667


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 528 WVNLKHRFSLRDLKGCSISLKEFLTKPRQSIFIKARAHFGMRSCWTQDGIIVIK 367
           W N      +R++K   +  KEF++  +Q+ + +A  H+G      Q G++V K
Sbjct: 397 WANACVLKIVREIKEVELYAKEFISGIQQASYPEAAKHYGRDP--KQMGVVVEK 448


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 314 KGLSSSIAVTL*RVPLVVLITMIPSWVQ 397
           K LS  +  T+  + +++ +T +PSWVQ
Sbjct: 53  KRLSIIVWTTVYLIGIIIQVTTVPSWVQ 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,366
Number of Sequences: 5004
Number of extensions: 58563
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)