Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e01
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319...    28   6.2  
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159...    28   6.2  
01_04_0082 + 15835137-15836312                                         28   6.2  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.2  

>11_06_0364 -
           22727978-22729149,22730475-22730727,22731628-22731963,
           22732306-22732512,22734988-22735686,22736441-22736590,
           22740204-22740962,22741023-22741235
          Length = 1262

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 528 WVNLKHRFSLRDLKGCSISL 469
           WVN+ H F+LRDL  CS+ L
Sbjct: 484 WVNVSHPFNLRDL-ACSLLL 502


>11_06_0361 -
           22711200-22712180,22712523-22712729,22715205-22715903,
           22717848-22717979,22720422-22721180,22721241-22721453
          Length = 996

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 528 WVNLKHRFSLRDLKGCSISL 469
           WVN+ H F+LRDL  CS+ L
Sbjct: 478 WVNVSHPFNLRDL-ACSLLL 496


>01_04_0082 + 15835137-15836312
          Length = 391

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 537 HGRWVNLKHRFSLRDLKGCSISLKE 463
           HG W NLKHR S+ D  G  I L E
Sbjct: 292 HGDW-NLKHRLSMSDAFGQDIFLDE 315


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 546 KTSHGRWVN-LKHRFSLRDLKGCSISLKEFLTKPRQSIFIKARAHFGMRSCWTQDGIIVI 370
           KT+H  WVN +K +  L        ++       +    ++      +++     GI+V+
Sbjct: 304 KTNHEDWVNTVKPKLGLDTSTRVLQAVNSKSDNIKSLYIVRNELRAALKNLLKDTGILVL 363

Query: 369 KTTNGTRHKVTAMEELSP 316
            TT G   K  A + LSP
Sbjct: 364 PTTAGYPLKRNARQRLSP 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,820
Number of Sequences: 37544
Number of extensions: 338319
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)