Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18e01
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.69 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.69 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 210 GFCLYFVMLSKCFLMFTEFNLHLLY 136
           GFCL F+M  +C  +   F ++  Y
Sbjct: 452 GFCLLFLMFFECIAISWAFGVNRFY 476



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 399 CWTQDGIIVIKTTNG 355
           CWTQD  ++  T  G
Sbjct: 159 CWTQDEDVICSTPIG 173


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 210 GFCLYFVMLSKCFLMFTEFNLHLLY 136
           GFCL F+M  +C  +   F ++  Y
Sbjct: 505 GFCLLFLMFFECIAISWAFGVNRFY 529



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 399 CWTQDGIIVIKTTNG 355
           CWTQD  I+  T  G
Sbjct: 212 CWTQDEDIICSTPIG 226


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 246 DFLPHHSFHSH 278
           DF+P+HS H H
Sbjct: 119 DFVPNHSSHEH 129


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 349 TCS--ISCLDNYDSILGPAGSHSEVSSCLDKYGLPGLC 456
           TCS  ++ L  Y  +  P+G H+  +  L      GLC
Sbjct: 499 TCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLC 536


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 234 SCSIVLCFGFCLYFVML 184
           S S ++C+G  +YFV L
Sbjct: 213 SASYLVCYGIWVYFVPL 229


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 234 SCSIVLCFGFCLYFVML 184
           S S ++C+G  +YFV L
Sbjct: 89  SASYLVCYGIWVYFVPL 105


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 435 FIKARAHFGMRSCWTQDGIIVIKTTNG 355
           ++K R H  +  C+  DGI ++   NG
Sbjct: 98  YLKER-HITLHHCYDADGIKLMNEENG 123


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 435 FIKARAHFGMRSCWTQDGIIVIKTTNG 355
           ++K R H  +  C+  DGI ++   NG
Sbjct: 98  YLKER-HITLHHCYDADGIKLMNEENG 123


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 627 KWLKVYWLALAALFM 671
           +W +VY+L +A++FM
Sbjct: 231 QWEEVYFLNMASVFM 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,252
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)