Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d22
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   0.89 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.6  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   2.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   6.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   6.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.3  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 242 SRIATAIFSCRTRMKSAMLSARESMTAVYRIYEEFCNETTL 120
           S +  A+F  RT  K+  +     M  VYR+Y  F   TTL
Sbjct: 656 SFLGNAVFGNRTAYKALSVIIMALMFLVYRLYSPFTYMTTL 696


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 475 FTLQSCTDCSRDTASVASCRDARASALAPCSDG 377
           FTLQ+C+ C+  T+S++      ++++AP   G
Sbjct: 106 FTLQACSTCTISTSSLSYSGTISSTSIAPSMIG 138


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 589 IKFFIIKYNRGSNRKITKISNDVSSLKCQTTLSRA 485
           +K FI   N  SN    KIS+D SS   QTT++ A
Sbjct: 207 VKKFITSMNTSSN---VKISSDPSSPSTQTTINSA 238


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 257 SLINTGE*CSNAKRRKTIGELHGNLGLDLDPILVHDRDPTTITTRCQSRSTGVAAGSHRG 436
           SL + G      +    I E   NL   L  +L+H R  +   T+ ++++   A+ SH+ 
Sbjct: 380 SLYDIGLHAETDREHTMISEFLTNLFTKLRCVLMHYRGISEFMTKLETKTPKHASSSHKS 439

Query: 437 GV 442
            +
Sbjct: 440 SI 441


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 507 HLRLETSFEIFVIFRLLPRLYFIIKNFI 590
           H ++  SF IF +FR+      I+K+F+
Sbjct: 576 HKQVVQSFSIFPVFRVCQMFAVILKDFV 603


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 121 YTASNILSRRACIGLRGKNNNIEIYYCF*FTS 26
           +T  N  +RR  I +RG+N N  +     FTS
Sbjct: 736 FTLLNTKNRRYTIRIRGENKNFRVLDIIPFTS 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,806
Number of Sequences: 5004
Number of extensions: 47064
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)