Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d20
         (250 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   0.84 
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   1.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   1.9  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    24   2.6  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    24   2.6  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    24   3.4  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    23   7.8  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    23   7.8  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 0.84
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 53   P*GYIFATFAFSCWSGLIIFYXLKLYQLV-SPHSKXGKATALAEDFRL 193
            P   +F T  F CW     FY +K Y+ +  P  K G A  L   F++
Sbjct: 1306 PFNLVFGTLFFLCW-----FYPIKFYKHIHHPGDKTGYAWLLYMFFQM 1348


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 203 SGVTVGNPPQEQLPFRSXNGAILTGTTSXSRK 108
           +G T  +PP   + F   +G I+TG    S K
Sbjct: 199 AGATFIDPPNPNVNFTQIDGKIVTGVNPQSAK 230


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 161 FRSXNGAILTGTTSXSRK*LIPTNMRXQMSQKYTLK 54
           F+  NG   TG+TS +R      + +  + +KY+ +
Sbjct: 104 FQGENGEAKTGSTSLTRSASATVSRKSSLQEKYSTR 139


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 216 QTSRIWRHSRKSSARAVAFPXXEW--GDTNWYNF 121
           +TS IW   R++ AR  A     W   D+ WY++
Sbjct: 505 ETSAIW--DRRARARRAAMEKYLWSEADSMWYDY 536


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 244 PDLVXEKVGADFQDLASQSE 185
           PD+  E+   DFQDL+S  E
Sbjct: 22  PDIDDEEDDVDFQDLSSSGE 41


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 68  FATFAFSCWSGLIIFYXLKLYQL 136
           FAT  +S W  L  F  L  YQL
Sbjct: 3   FATILYSIWVVLSSFVILSAYQL 25


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 55  LRVYFCDICXLMLVGINYFLLXEVVPVSIAPF 150
           LRV F  +  ++ + I YFL   V  +   PF
Sbjct: 410 LRVLFFSLLFIIGIHIFYFLFFHVATIQQWPF 441


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 32  KTNIXWAP*GYIFATFAFSCWSGLIIFY 115
           K+ + W    YI A   F+ ++ +IIF+
Sbjct: 224 KSYLGWRWTSYITAIMGFTAFTSMIIFH 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,126
Number of Sequences: 5004
Number of extensions: 12659
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)