Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d20
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0598 + 18875270-18875437,18875547-18876179                       27   2.1  
06_03_1237 + 28602250-28604196                                         27   2.8  
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998...    25   6.4  
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424...    25   8.5  

>09_04_0598 + 18875270-18875437,18875547-18876179
          Length = 266

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -3

Query: 245 TRLGVXESRGRLPGSGVTVGNPPQEQLPFRSXNGAILTGTTSXSRK*LIPTNMRXQMSQK 66
           T  G+  +  RL    +T  N  +  L  +S    I+  T   +   L  T +   +S  
Sbjct: 38  TAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLSST 97

Query: 65  YTLKEP 48
           YT+K+P
Sbjct: 98  YTIKKP 103


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 70  CDICXLMLVGINYFLLXEVVPVSIAPFXXRK-GNCSCGGF 186
           CD C L +  ++     E++      F   K G CSCGGF
Sbjct: 608 CDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGF 647


>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
            22999888-22999957,23000050-23000293,23000396-23000482,
            23000655-23000706,23000830-23001226,23001324-23001648,
            23001748-23001914,23002007-23002547
          Length = 1646

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 218  GRLPGSGVTVGNPPQEQLPFRSXNGAILTGTTSXSRK*LIPTN 90
            G  P SG   G PP  QLP      A    +TS ++    PTN
Sbjct: 1403 GSPPASGSAKGVPPAVQLPSPQQQSAKNPASTSGAKS--APTN 1443


>04_04_1574 -
           34536744-34537136,34541247-34541405,34541497-34542411,
           34543642-34543731,34544324-34544390,34544483-34544676,
           34544770-34545510,34545596-34545661,34545783-34545908,
           34545978-34546073,34546153-34546521,34546602-34546724,
           34546802-34546906,34547394-34547531,34547665-34547760,
           34548018-34548275
          Length = 1311

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 47  WAP*GYIFATFAFSCWSGLIIFYXLKLYQLVSPHSKXGKAT 169
           W   G I    A+S   G  +F  LKL +L   H K   A+
Sbjct: 560 WGLTGDIVGKLAYSALIGFALFGTLKLLRLQFGHMKPASAS 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,736,606
Number of Sequences: 37544
Number of extensions: 81197
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)