Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d20
         (250 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK172812-1|BAD18782.1|  571|Homo sapiens protein ( Homo sapiens ...    30   1.2  
BC000559-1|AAH00559.1|  842|Homo sapiens ATP-binding cassette, s...    28   6.3  
AK057026-1|BAB71347.1|  766|Homo sapiens protein ( Homo sapiens ...    28   6.3  
AJ289233-1|CAB95766.2|  842|Homo sapiens ABC transporter umat pr...    28   6.3  
AF308472-1|AAG33617.1|  896|Homo sapiens ATP-binding cassette ha...    28   6.3  
AF076775-1|AAF75107.1|  842|Homo sapiens MT-ABC transporter prot...    28   6.3  
AF070598-1|AAC28653.1|  511|Homo sapiens ABC transporter protein.      28   6.3  
AB039371-1|BAA96733.1|  842|Homo sapiens mitochondrial ABC trans...    28   6.3  

>AK172812-1|BAD18782.1|  571|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23973 fis, clone HEP18305, highly similar to
           ATP-binding cassette, sub-family B, member 6,
           mitochondrial precursor. ).
          Length = 571

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ WSGLI+F  + LY
Sbjct: 130 GIIYFSMFFNAWSGLIVFLCMSLY 153


>BC000559-1|AAH00559.1|  842|Homo sapiens ATP-binding cassette,
           sub-family B (MDR/TAP), member 6 protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 401 GIIYFSMFFNAWFGLIVFLCMSLY 424


>AK057026-1|BAB71347.1|  766|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32464 fis, clone SKNMC1000251, highly similar to
           Homo sapiens MT-ABC transporter (MTABC) mRNA. ).
          Length = 766

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 325 GIIYFSMFFNAWFGLIVFLCMSLY 348


>AJ289233-1|CAB95766.2|  842|Homo sapiens ABC transporter umat
           protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 401 GIIYFSMFFNAWFGLIVFLCMSLY 424


>AF308472-1|AAG33617.1|  896|Homo sapiens ATP-binding cassette
           half-transporter protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 455 GIIYFSMFFNAWFGLIVFLCMSLY 478


>AF076775-1|AAF75107.1|  842|Homo sapiens MT-ABC transporter
           protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 401 GIIYFSMFFNAWFGLIVFLCMSLY 424


>AF070598-1|AAC28653.1|  511|Homo sapiens ABC transporter protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 70  GIIYFSMFFNAWFGLIVFLCMSLY 93


>AB039371-1|BAA96733.1|  842|Homo sapiens mitochondrial ABC
           transporter 3 protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  GYIFATFAFSCWSGLIIFYXLKLY 130
           G I+ +  F+ W GLI+F  + LY
Sbjct: 401 GIIYFSMFFNAWFGLIVFLCMSLY 424


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,555,770
Number of Sequences: 237096
Number of extensions: 446187
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)