Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d20
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.57 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.57 
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   1.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 0.57
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 219  GQTSRIWRHSRKSSARAVAFPXXEW 145
            G   R WR S   +  AV  P  EW
Sbjct: 1321 GHVVRPWRGSATLACNAVGDPTREW 1345


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 0.57
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 219  GQTSRIWRHSRKSSARAVAFPXXEW 145
            G   R WR S   +  AV  P  EW
Sbjct: 1317 GHVVRPWRGSATLACNAVGDPTREW 1341


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 229 EKVGADFQDLASQSEILRKS 170
           EK   DFQD+ S SE  +++
Sbjct: 236 EKRSTDFQDVESGSESFKRA 255


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 229 EKVGADFQDLASQSEILRKS 170
           EK   DFQD+ S SE  +++
Sbjct: 236 EKRSTDFQDVESGSESFKRA 255


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 59  GYIFATFAFSCWSG---LIIFYXLKLYQLVS 142
           G  +AT   SCW+    +II      Y LVS
Sbjct: 99  GIGYATCVLSCWTNIYYIIILAWALFYLLVS 129


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 59  GYIFATFAFSCWSG---LIIFYXLKLYQLVS 142
           G  +AT   SCW+    +II      Y LVS
Sbjct: 152 GIGYATCVLSCWTNIYYIIILAWALFYLLVS 182


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 198 RHSRKSSARAVAFPXXEW 145
           +HS+  S +   +P  EW
Sbjct: 219 KHSKTKSPKLRPYPNWEW 236


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 212 VCPYFLXHQV 241
           +CPY L H++
Sbjct: 454 LCPYTLKHKI 463


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 197 VTVGNPPQEQL 165
           V  GNP Q+QL
Sbjct: 108 VVYGNPQQQQL 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 172 SCGGFPTV 195
           SCGG PT+
Sbjct: 369 SCGGGPTI 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,934
Number of Sequences: 438
Number of extensions: 1127
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)