Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d18
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.7  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    22   4.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 346 SNIVLIHVFL*DFHREGLSPVILQDTEVP 260
           + +V  H+   DF R+ ++P++++  E P
Sbjct: 180 ATVVQAHLDTCDFTRDKVAPILVRARETP 208



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 252 EHRGTSVSCKITGDSPS 302
           E  GT+V C++ GD  S
Sbjct: 59  EFDGTTVLCRVCGDKAS 75


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 263 YFGILQDHRGQPLSVEVSEE-YMDQDYIATN 352
           + G   DH+G+P+S+  ++  +++ D    N
Sbjct: 538 FLGPKHDHQGRPISISKNQHLFVELDQFIQN 568


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 59  IKSSGKSNRILIRVLINWFSFYNSY 133
           +KSS  S    +R +++W  F+ +Y
Sbjct: 445 VKSSKSSGWRKLRNIVHWTPFFQTY 469


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 252 EHRGTSVSCKITGDSPS 302
           E  GT+V C++ GD  S
Sbjct: 1   EFDGTTVLCRVCGDKAS 17


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 423 KKYSTKKIKTLNYQINTIFKRDQCSRTLI 509
           KKY  + +  LN+ +N + K      T+I
Sbjct: 46  KKYFEQTLNELNFNLNYVNKGVTYKHTII 74


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 23  SNLYNDLRISIFIKSSGKSNRILIRVLINWFSFYN 127
           +N Y D  I +      K N I  +   NW S +N
Sbjct: 142 TNKYKDYYIWVDPVKDDKGNPIKDKYPNNWLSVFN 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,956
Number of Sequences: 438
Number of extensions: 2578
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)