Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d14
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 32 0.084
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 28 1.0
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 1.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 4.2
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 5.5
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 26 5.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 7.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 7.3
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 9.6
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 9.6
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 9.6
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.6
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 9.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 9.6
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 31.9 bits (69), Expect = 0.084
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 124 EAKRKYPKSIIKTTPDEELPLPKKVNEYPEHFN 222
E+KR Y ++II+ PDEEL K +E+ +F+
Sbjct: 56 ESKRVYDETIIEDKPDEELQAELKDDEFSAYFS 88
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 337 ESREILKKGNKNIQWISKERPRILGSPKDAYIDEKTFRLTDEVDGVSGKSNGSRSWFD 510
E+ E L+KG + + K + LGS ++ +T L VSG S GS F+
Sbjct: 315 EAYEYLEKGEYQLSY-DKAKESCLGSFSSPSVNARTHNLVGTFKFVSGDSKGSMENFN 371
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 136 KYPKSIIKTTPDEELPLPKKVNEYPEHFN-LPVQ 234
KY +++ PD++LP P+ NE P N LP Q
Sbjct: 185 KYLTNLMTKIPDDQLPKPQPKNEEPAAPNDLPKQ 218
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +1
Query: 208 PEHFNLPVQFGHIYKDGYGDPRSNLKSPIDLVELHMKTPRNYNE--SREILKKGNKNIQW 381
P NL F I+K G N + +D + P +N I + + IQ+
Sbjct: 312 PSPENLKTLFEFIFK---GFDALNYEEHVDYDIIQSTNPAYHNAIVRVNIFRDHRQTIQY 368
Query: 382 ISKERPRILGSPKDAYIDE 438
IS E +LG + IDE
Sbjct: 369 ISPEDSNVLGQAELVVIDE 387
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 439 KTFRLTDEVDGVSGKSNGSRSWFD----WVSIQQSNIATLKPKQKTVELKSEINR----Y 594
KTF+L + + SGK G +FD +++++ N + L P++ VE S R Y
Sbjct: 34 KTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSY 93
Query: 595 DHNESNSKIKGQYFASNS 648
++ E + Q A S
Sbjct: 94 EYTERTDRYMEQQNAHES 111
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 476 VVKATDLGLGLTGSQYNKVI*QP*NQNRRL*NSKVKLIDTTIMNRTLKLRDSISLAIL 649
VVK +D GL S + + +NRR+ +K + ++ TLK ++ + A+L
Sbjct: 82 VVKNSDTDNGLLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVDPALL 139
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 163 TPDEELPLPKKVNEYPEHFNLPVQ 234
TP + PL + V+EYP + + P Q
Sbjct: 263 TPAAQAPLIRSVSEYPANVSPPAQ 286
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 7.3
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +1
Query: 319 TPRNYNESREILKKGNKNIQWISKERPRILGSPKDA----YIDEKTFRLTDEVDGVSGKS 486
TP N E EI+ +GN N + +S + S A YI + + + S S
Sbjct: 224 TPTNLEEVMEIIIRGNSN-RTMSPTEANAVSSRSHAVLQIYITQTPKSGEKQEESESQNS 282
Query: 487 NGSRSWFDWVSIQQSNIAT-LKPKQKTVELKSEINR 591
+ RS F ++ + S A+ K + K + + INR
Sbjct: 283 HKVRSVFSFIDLAGSERASATKNRGKRLVEGANINR 318
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -2
Query: 606 FIMVVSINFTFEFYSLLFWFQGCYITLLY*DPVKPRPRSVAFTTDTVDF---IC*SKSFF 436
F++ ++ F + W + + DP + R R +F + DF +C + S
Sbjct: 66 FLLAITTGFCGSLTTFSSWMLQMFTGMANLDPFERRGRGYSFLSVVSDFMVTMCIAMSSL 125
Query: 435 IYVRILRTTQNSW 397
I+ + + T W
Sbjct: 126 IWGKQIGKTTGQW 138
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 169 DEELPLPKKVNEYPEHFNLPVQFGHIYKDGYGDPRSNLKS 288
+ ++P ++ N PE V F DG RS+ KS
Sbjct: 63 ESKIPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKS 102
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 427 YIDEKTFRLTDEVDGVSGKSNGS 495
Y +TF+ DE+D + GKS GS
Sbjct: 95 YDSTQTFQTGDEIDELIGKSVGS 117
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -2
Query: 606 FIMVVSINFTFEFYSLLFWFQGCYITLLY*DPVKPRPRSVAFTTDTVDF---IC*SKSFF 436
F++ ++ F + W + + DP + R R +F + DF +C + S
Sbjct: 66 FLLAITTGFCGSLTTFSSWMLQMFTGMANLDPFERRGRGYSFLSVVSDFMVTMCIAMSSL 125
Query: 435 IYVRILRTTQNSW 397
I+ + + T W
Sbjct: 126 IWGKQIGKTTGQW 138
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 172 EELPLPKKVNEYPEHFNLPVQFGHIYKDG 258
+EL +P K N Y + +P F +YK+G
Sbjct: 503 DELMIPSKHNRYIDLPYIPGSFIKVYKNG 531
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 517 SIQQSNIATLKPKQKTVE-----LKSEINRYDHNESNSKIKGQYFASN 645
S +++ +L P + T++ L +EI+ Y H+ S KGQ SN
Sbjct: 103 SPSKNHETSLSPSKSTIDNNERKLDNEIDNYKHDVKYSPYKGQGKTSN 150
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 586 NRYDHNESNSKIKGQYFASNSFD 654
NRY++ +KIK Q+ +SN+F+
Sbjct: 666 NRYENENRLNKIKLQHSSSNAFN 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,374
Number of Sequences: 5004
Number of extensions: 50383
Number of successful extensions: 172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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