Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d14
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846...    31   0.81 
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108...    30   1.9  
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531           29   3.3  
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    28   7.5  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    28   7.5  
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    28   7.5  

>05_04_0308 -
           20081366-20082404,20082702-20083078,20084293-20084679,
           20085038-20086000
          Length = 921

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 409 GSPKDAYIDEKTFRLTDEVDGVSGKSNGSRSWFDWVSIQQSNIATLKPKQKTVELKSE 582
           GS    YI    F+LT +   + GKS    S ++  SI+ + +  L  +QKT +L  E
Sbjct: 238 GSTSKTYITYSPFKLTQQSQDIRGKSCFPESTYE-KSIENNFLEYLVEQQKTQDLSPE 294


>01_04_0136 +
           16506747-16506982,16507128-16507728,16510443-16510842,
           16513595-16513709,16513776-16514352
          Length = 642

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
 Frame = +1

Query: 265 DPRSNLKSPIDLVELHMKTPRNYNESREILKKGNKNIQWISKERPRILGSPKDAYIDEKT 444
           DP  +    + + EL       + + +E   KG +NI    K     + SP     +EKT
Sbjct: 248 DPIEDEYLGVTVGELTTIMSNEWLKEKEFSSKGVQNIHHEEKSNMLEMSSPSLTKEEEKT 307

Query: 445 FRLTDEVDGVSGKSNGSRSWFDWVSIQQSNIATLKP--KQKTVELKSEIN 588
                  +G+ GK NG+       +  +S+++T+    +Q  VE  S+++
Sbjct: 308 DAPILSKEGIKGKLNGADITQGECASDESHLSTIHANIEQIWVETTSDLH 357


>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
          Length = 193

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +1

Query: 301 VELHMK--TPRNYNESREILKK----GNKNIQWISKERPRILGSPKDAYIDEKTFR 450
           VEL M+  T   Y E + +LK+    G K   W + + P    S KD + DE++FR
Sbjct: 95  VELEMEKVTVTGYVERQRVLKEVRRAGKKAEFWPNPDLPLYFTSAKDYFHDEESFR 150


>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
 Frame = +1

Query: 325 RNYNESREILKKGNKNIQWISKERPRILGSPKDAYIDEKTFRL---TDEVDGVSGKSNGS 495
           R+ +E+ +I KKG  + +  +    RIL    +A  + K   L   T+E DG S KS+  
Sbjct: 442 RSISEAIKITKKGENSAEPAAPANRRILTPRPEASSNGKVNGLSPTTNEYDGNSSKSDDY 501

Query: 496 R---SWFDWVSIQQSNIATLKPKQKTVELKSEINRYDHN-ESNSKIKGQ 630
           R      +  ++ +SN    + ++ T +    ++  D N +S+ +I G+
Sbjct: 502 RDSDGEEESETLDRSNRRRRRSQRYTRDFVEAVSDIDPNFDSDDEIMGE 550


>03_02_0693 - 10441253-10441294,10441404-10441511,10441594-10441677,
            10441765-10443062,10443111-10444804,10444890-10444957,
            10445057-10445186,10445292-10445415,10445551-10445711,
            10446714-10446868
          Length = 1287

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 271  RSNLKSPIDLVELHMKTPRNYNESREILKKGNKNIQWISKERPRILGSPK 420
            RS LK    LV+  +K     N   E +K  + N++ +  +RP ++G+P+
Sbjct: 1208 RSMLKRAPTLVQPSIKLSDENNTILEQIKNKSFNLKPVLAKRPNMMGAPR 1257


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 448 RLTDEVDGVSGKSNGSRSWFDWVSIQQSNIATLKPKQKTVELKSEINRYDHNESNSKIK 624
           R+T  ++  +G   G       V +Q   IA++K    T ++K+E+N Y   ++  K+K
Sbjct: 266 RMTATINS-NGDKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVNSYTSAKALQKVK 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,399
Number of Sequences: 37544
Number of extensions: 264695
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)