Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d14
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016330-1|AAH16330.1|  352|Homo sapiens RAD51AP1 protein protein.     31   4.8  
AK096930-1|BAC04902.1|  352|Homo sapiens protein ( Homo sapiens ...    31   4.8  

>BC016330-1|AAH16330.1|  352|Homo sapiens RAD51AP1 protein protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
 Frame = +1

Query: 124 EAKRKYPKSIIKTTPDEELPLPKKV--NEYPEH-FNLPVQFGHIYKDGYGDP--RSNLKS 288
           E K+  PK  +     EE+P+ +K      PE  F++P       K    D   + +L+ 
Sbjct: 42  ELKQDKPKPNLNNLRKEEIPVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEV 101

Query: 289 PIDLV--ELHMKTPRNYN-ESREILKKGNKNIQWISKERPRILG-SPKDAYIDEKTFRLT 456
            + L   EL   T    N + + I K G+  I+ ++K  P I   S    Y+D     + 
Sbjct: 102 ALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMNKS-PHISNCSVASDYLDLDKITVE 160

Query: 457 DEVDGVSGK 483
           D+V GV GK
Sbjct: 161 DDVGGVQGK 169


>AK096930-1|BAC04902.1|  352|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39611 fis, clone SKNSH2008940, highly similar to
           Homo sapiens Rad51-interacting protein mRNA. ).
          Length = 352

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
 Frame = +1

Query: 124 EAKRKYPKSIIKTTPDEELPLPKKV--NEYPEH-FNLPVQFGHIYKDGYGDP--RSNLKS 288
           E K+  PK  +     EE+P+ +K      PE  F++P       K    D   + +L+ 
Sbjct: 42  ELKQDKPKPNLNNLRKEEIPVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEV 101

Query: 289 PIDLV--ELHMKTPRNYN-ESREILKKGNKNIQWISKERPRILG-SPKDAYIDEKTFRLT 456
            + L   EL   T    N + + I K G+  I+ ++K  P I   S    Y+D     + 
Sbjct: 102 ALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMNKS-PHISNCSVASDYLDLDKITVE 160

Query: 457 DEVDGVSGK 483
           D+V GV GK
Sbjct: 161 DDVGGVQGK 169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,412,597
Number of Sequences: 237096
Number of extensions: 1557234
Number of successful extensions: 3523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3523
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)