Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d14
         (658 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA...    29   4.2  
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    29   5.6  

>AE014297-1125|AAF54511.2| 3111|Drosophila melanogaster CG3996-PA
            protein.
          Length = 3111

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +1

Query: 385  SKERPRILGSPKDAYIDEKTFRLTDEVDGVSGKSNGSRSWFDWVSIQQSNIATLKPKQKT 564
            SKE P +  SPK++ +  K  ++T++ + +  K + S+   + + I  +++  + P  KT
Sbjct: 1968 SKETPTVAVSPKESKVSSK--QMTEKKETI--KDSSSKELPEKMVINSTDVGPMDPNGKT 2023

Query: 565  VEL 573
            V L
Sbjct: 2024 VVL 2026


>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 223 LPVQFGHIYKDGY--GDPRSNLKSPIDLVELHMKTP 324
           LP +F H Y DG    D  S LK+ IDL+ L++KTP
Sbjct: 4   LPFKF-HSYFDGLIGMDLLSYLKTEIDLLNLNLKTP 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,790,255
Number of Sequences: 53049
Number of extensions: 496299
Number of successful extensions: 1898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)