Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d13
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 28 1.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 3.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.1
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 5.1
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 26 5.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 6.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 6.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.8
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 9.0
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 9.0
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -1
Query: 352 LMYSHSVLRKGDFGMSSFLLSTYFCIFCILSLLSSTISDHFAFFFFLTKTGKSISEHGKL 173
+++++S L FG +S L S F + + + I D F FFL+ TGK+ISE K+
Sbjct: 257 IIHANSQLLYLMFGRNSMLGSAVFWQAVLYPPVFAKIVDLF-LRFFLSWTGKNISETQKI 315
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 552 HLKNNPRPYYPKSWLWPEEYAATLI 626
HL+ PY K WL P Y A L+
Sbjct: 1517 HLRPISTPYPTKEWLQPRRYKAQLM 1541
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 234 WSEIVEESNERMQKIQKYVESKN---EDMPKSPFLKTECEYINSEVFIILLPALEETLRK 404
+ E ++ E++++IQK E E+ + F+ C+Y+ S++ + ++ L
Sbjct: 565 FEEELQIDPEKLEEIQKEAEDSGALMEEELRGKFINLRCKYLFSKLTTLHEKEIDTLLTI 624
Query: 405 AKIWE 419
IW+
Sbjct: 625 PNIWD 629
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 185 FRNRFSSFRQEKKESKMVRDCRRK 256
F N FS F +K S + R+ RRK
Sbjct: 603 FENHFSDFNSNRKVSPVKREVRRK 626
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 271 RKYKNTSKARMRTCQSHLFSKPNASTLTRK 360
R Y N S A + S + SKP++ST+ R+
Sbjct: 567 RSYSNVSSASSNSLISIISSKPSSSTVQRQ 596
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 369 ILLPALEETLRKAKIWEALVRQKCFFNGIDHIAQVLWNNNPRY-PGRKFQSPHIFNMPWA 545
+ L ALE +K+ EAL +++ + +D+IA + + P++ P ++ + ++
Sbjct: 669 VFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKFEPFIRYGAGQLYGKYEF 728
Query: 546 REHLKNNP 569
+ +NP
Sbjct: 729 EKEKSSNP 736
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1
Query: 295 LSTYFCIFCILSLLSSTI 242
LS YF I C LSLLSS I
Sbjct: 40 LSAYFPIKCTLSLLSSPI 57
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.8 bits (54), Expect = 5.1
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = -1
Query: 394 VSSSAGSRIINTSELMYSHSVLRKGD-FGMSSFLLSTYFCIFCILSLLSSTISDHFAFFF 218
+S ++G I Y+H++L + F +L S+ IFC+ L + +DH
Sbjct: 101 ISQTSGDYFIFLQRF-YAHAILFVMELFNKEQYLQSSKLLIFCLRILPADLPNDHQC--H 157
Query: 217 FLTKTGKSISEHGKLSGNLKVAKASTISYV 128
L +S + L+ LK A S++S V
Sbjct: 158 ILVNRLESCKNY--LNNRLKQAMTSSLSKV 185
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 249 EESNERMQKIQKYVESKNEDMPKSPFLKTECEYIN 353
EE+ + +KI +Y+ + N+ + P KT+ ++IN
Sbjct: 113 EENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFIN 147
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 513 QSPHIFNMPWAREHLKNNPRPYYPKSWLWPEEY 611
Q+ + MP +E L N P SW+ P+ +
Sbjct: 749 QNKEVTGMPLNKEELTNPAFPQSRTSWMMPQSF 781
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = -1
Query: 415 QIFAFLKVSSSAGSRIINTSELMYSHSVLRKGDFGMSSFLLSTYFCIFCILSLLSSTISD 236
+I L+ S + + +NT+ V++ F L T C+ IL LS+
Sbjct: 584 EILPSLESSERSSTPFLNTNSASLKSEVVQLTTFSDFQLKLKTLQCVLDILQSLSNWAES 643
Query: 235 HFAFFFFLTKTGKSISEHG 179
+L++ G S E G
Sbjct: 644 G----LYLSRRGVSTDEQG 658
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 6.8
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +3
Query: 252 ESNERMQKIQKYVESKNEDMPKSPFLKTECEYINSEVFIILLPALEETLRKAKIWEALVR 431
E ER+++IQK +E N K L T S++ + +TLR+A ++
Sbjct: 999 ELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLML-------KTLREA------LQ 1045
Query: 432 QKCFFNGIDHIAQVLWNNNPRY 497
K N IDH++ +L N Y
Sbjct: 1046 SKT--NNIDHLSTILERNRKEY 1065
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 237 SEIVEESNERMQKI-QKYVESKNEDMPKSPFLKTECEYINSEVFIILLPALEETLRKAKI 413
+EI ++ + K+ KY+E ++ E ++ E F L ALE T+ I
Sbjct: 270 TEITDKLRGEINKVVNKYIEQGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVI 329
Query: 414 WEALVRQKCFFNGIDHI 464
+ A R C G + I
Sbjct: 330 F-ASNRGICTIRGTEDI 345
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 427 SDRSVFSTG*IILHKCCGTIIRVTQGANSKVRIYLTCLGHENT 555
+DRS+F +G II C T + N K R+ T + H NT
Sbjct: 276 TDRSLFFSGQIIDFTICYTHNHHRRIHNIKARLLETHIFHPNT 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,247
Number of Sequences: 5004
Number of extensions: 59243
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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