Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d13
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748     28   5.3  
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426...    28   5.3  
03_02_0363 + 7812419-7812591,7812800-7813067                           28   7.0  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    28   7.0  
08_02_0658 - 19755757-19756986                                         27   9.2  
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180...    27   9.2  

>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
          Length = 414

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 551 FSCPRHVKYMRTLEF-APWVTRIIVPQ--HLCNMIYPVEKTLLSDEC 420
           +S  +HV+ M TL     W     +PQ  + C +++PV +T ++D C
Sbjct: 239 YSLDQHVRLMFTLNSRGNWKRNPPIPQGYYGCCLVFPVAETTVADLC 285


>01_01_0574 +
           4263247-4263615,4263945-4263992,4264308-4264514,
           4264670-4264826,4264958-4265041,4265785-4265909,
           4268100-4268218,4268535-4268619,4269087-4269134
          Length = 413

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 448 LKKHFCLTSASQIFAFLKVSSSAGSRIINTSELMYSHSVLRKGDFGMSSFL 296
           LK  FC    S++  FL+ + SA  RI+  + L          DFG+   L
Sbjct: 197 LKPSFCQMLMSEVNNFLRWAQSANQRIMRPTSLDRHGRGAALSDFGLQEML 247


>03_02_0363 + 7812419-7812591,7812800-7813067
          Length = 146

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +1

Query: 151 WRLLSCLIVYRVPKSIFQFSSRKKRKQNGQRL*KKVTRECRKYKNTSKARMRTCQSHLFS 330
           WR  + + VYR+P +  +F S       G++      + CR  K + K+R R+ +   F+
Sbjct: 13  WRRPTLIPVYRLPAAC-RFLSSATPSLCGKK--NNQLQCCRLKKESEKSRARSLERQSFA 69

Query: 331 KPNA 342
            P+A
Sbjct: 70  APSA 73


>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 268  ILSLLSSTISDHFAFFFFLTKTGKSISEHGKLS-GNLKVAKASTI 137
            I  +LS   SDH + F FL KT   +   GKL+   L   K ST+
Sbjct: 1330 IQKILSELHSDHHSLFLFL-KTAIEVHLSGKLNFSELNARKNSTV 1373


>08_02_0658 - 19755757-19756986
          Length = 409

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 553 CSRAQGMLNICGLWNL 506
           CSR + M+  CGLW+L
Sbjct: 112 CSREEDMVTCCGLWSL 127


>02_05_0213 +
           26815889-26816475,26817718-26817788,26817985-26818073,
           26818910-26818991,26819089-26819204,26819290-26819451,
           26819531-26819680,26819969-26820037,26820375-26820491
          Length = 480

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 214 LTKT--GKSISEHGKLSGNLKVAKASTISYVVDF*SLFFPFRSVFFAVIG 71
           LTK    K + E+ KL   L + K    S    F +LF PF   FF  IG
Sbjct: 423 LTKAVLSKYVDENQKLQQELDLLKKKRSSSDGGFTALFVPFVFAFFVFIG 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,163
Number of Sequences: 37544
Number of extensions: 320547
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)