Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d13
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    31   0.89 
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81089-6|CAB03134.2|  219|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AJ972875-1|CAI99633.1|  304|Caenorhabditis elegans beta-1,3-gluc...    28   6.3  

>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 261 ERMQKIQKYVESKNEDMPKSPFLKTECEYINSEVFIILLPALEETLRKAKIWEALVRQKC 440
           ER+QK++K +E +NE +     L  + + +N E   +     E  L  A I   L + +C
Sbjct: 243 ERLQKMEKALERENERLNHQKELSDKLKVVNEENNDLRQNLAENHLELAMIKSELAQVRC 302

Query: 441 FFN 449
            F+
Sbjct: 303 EFD 305


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 445 KKHFCLTSASQIFAFLKVSSSAGSRIIN 362
           KK+FCL S S+ F +  V+S  GS +++
Sbjct: 220 KKNFCLQSVSKAFNYAIVASEIGSHVLH 247


>AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical
           protein F52H2.1 protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 497 VTRIIVPQHLCNMIYPVEKTL-LSDECLPN 411
           V R + P HL N +YPV++ +   D+C PN
Sbjct: 447 VFRELYPLHLQNYVYPVQQLVNEEDDCAPN 476


>Z81089-6|CAB03134.2|  219|Caenorhabditis elegans Hypothetical
           protein F53H4.2 protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 333 TECEYINSEVFIILLPALEETLRKAKIWEALVRQK 437
           TEC+ I+ ++    +  +++ L  A  WEAL+  K
Sbjct: 40  TECDQISQDIAKCFVSVIQKNLLSASSWEALLMDK 74


>AJ972875-1|CAI99633.1|  304|Caenorhabditis elegans
           beta-1,3-glucuronosyltransferase protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 271 CILSLLSSTISDHFAFFFFLTKTGKSISEHGKLS-GNLKVAKASTISYVVD 122
           C+L  L    S  ++  F+L K  + +  H K S   +KV +A    Y V+
Sbjct: 253 CLLEDLGEIYSSLYSMVFYLQKNNEILVWHTKTSYSGMKVKEAEKFGYFVE 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,621
Number of Sequences: 27780
Number of extensions: 321486
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)