Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d11
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 36 0.003
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 31 0.094
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 29 0.38
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 29 0.66
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 28 0.87
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 28 1.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.0
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 27 2.7
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 3.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 4.7
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 8.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 8.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 8.1
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 36.3 bits (80), Expect = 0.003
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Frame = +3
Query: 129 MSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDN 308
MS+L ++K +N Q ++ + + +TVG +++ + + + G+PP+ + ++
Sbjct: 1 MSSLRLRLKYEN-QSAVETVEANATVGSFLDLVAAKFSLPRNSIALKFGFPPQDIPLVNS 59
Query: 309 SKTLSELGLKTGETLIVEEKAVTKI-----------NATQTETRPSQNGVE-----SHET 440
LS L + +G+ ++V + A T NA T P Q + SH++
Sbjct: 60 DVPLSTL-VSSGQQILVLKNAATSFSTNEPAKPPIPNAATKPTFPPQTEISNPPAVSHQS 118
Query: 441 IESCRP--------GILMKKVVPSDNSCLFTSI 515
+ + G + +V+P DNSCLF ++
Sbjct: 119 KNTSQDPPYVSTPIGDIALRVMPDDNSCLFRAL 151
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 31.5 bits (68), Expect = 0.094
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 48 FVEILMHFVTQLKYK*IIERKNTSQVKMSALVFKIKSKNGQQVLKDLTS-ESTVGELKMF 224
FV++ V L K + RK + + SA+ K +N ++D TS ES++ +++ F
Sbjct: 1323 FVDVFFKIVDYLN-KWLRMRKKRNWDRRSAIARK---ENRYMSVEDATSRESSISKVESF 1378
Query: 225 LSSISDISIERVNILCGYPPKAL 293
LS ++ V++ CG+ +AL
Sbjct: 1379 LSRFPSKTLGIVSLNCGFHARAL 1401
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 399 ETRPSQNGVESHETIESCRPGILMKKVVPSDNSCLFTSIGF 521
ETR + V ++T +S P + ++ S N +FT GF
Sbjct: 475 ETREAVQHVRKNDTSQSPSPSFCQRSIMDSKNHRIFTMFGF 515
>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 128
Score = 28.7 bits (61), Expect = 0.66
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 237 SDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEKAVTKIN 386
S +S++R IL G PPK + ++ L +GL+ ++ E+ + K+N
Sbjct: 7 SKVSLKR--ILQGNPPKPIGLTEYGHLLRLVGLREADSKEENERTILKLN 54
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 177 LKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNS 311
L ++T E+ + + ++ + S E+V ILCGY K LD D++
Sbjct: 186 LTNITRENFKRAFTLHIGTLLEHS-EKVAILCGYAKKILDLLDDT 229
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 105 RKNTSQVKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERV 260
+K S+ MS V +NG++V LT TV S D+S ER+
Sbjct: 360 QKRASETSMSTNVSLPYYQNGRRVRNILTPYPTVSLASTMTSETEDVSEERI 411
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 225 LSSISDISIER-VNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEKAVT 377
L+S+ D +I+ ++ C PPK ++++ S LK+G I+ KAVT
Sbjct: 781 LTSLIDNAIQLFASMFCHQPPKVMESTLEIMVASVTNLKSGRD-ILRYKAVT 831
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 286 LGGYPHNILTLSMLISDMLDKNIFNSPTVLSEVKSFK 176
L YP L + SD L + NSP V +E+ FK
Sbjct: 602 LKNYPEPNLIIEKYGSDALRLYLINSPVVRAEILKFK 638
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 150 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 329
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 59
Query: 330 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 503
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 150 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 329
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 135
Query: 330 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 503
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 195
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 150 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 329
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 211
Query: 330 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 503
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 271
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 150 IKSKNGQQVLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 329
+K+ G+ + ++ S T+ +K + I ++ ++ + K L+ + +TLS+
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDY 287
Query: 330 GLKTGETL--IVEEKAVTKINATQTETRPSQNGVESHETIESCRPGILMKKVVPSDNSCL 503
++ TL ++ + +I + VES +TI++ + I K+ +P D L
Sbjct: 288 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 347
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/105 (20%), Positives = 41/105 (39%)
Frame = +3
Query: 54 EILMHFVTQLKYK*IIERKNTSQVKMSALVFKIKSKNGQQVLKDLTSESTVGELKMFLSS 233
E++MH + LKYK + + +Q + S L + N V + + S+ G + F +
Sbjct: 157 ELVMHLLQSLKYKQSLVKSRLNQSR-SNLPQMTREANDNDVNRRNSRGSSQGSISSFRNP 215
Query: 234 ISDISIERVNILCGYPPKALDTSDNSKTLSELGLKTGETLIVEEK 368
S E P A D + L K ++ +++
Sbjct: 216 DSRKQYEETTSASLSAPGAFDALKQTNALERRASKRLSHMVKDQQ 260
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 276 YPPKALDTSDNSKTLSELGLKTGETL 353
YPP ALDT + L++ G+ T+
Sbjct: 592 YPPYALDTDTETHDLAQFGVSPNATM 617
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 156 SKNGQQVLKDLTSESTVGELKMFLSSISDISIE-RVNILCGY 278
S NG+ +L+D S V ++ +ISDI + + CGY
Sbjct: 184 STNGEIILRDPNSFQPVNKVVAHTGTISDIDTSGNLLLSCGY 225
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 159 KNGQQ---VLKDLTSESTVGELKMFLSSISDISIERVNILCGYPPKALDTSDNSKTLSEL 329
KN QQ V+ D+++++ + ELK + + + +ER ++ Y + L + KT+ E
Sbjct: 6 KNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLI--YSGRIL---ADDKTVGEY 60
Query: 330 GLKTGETLI-VEEKAVTKINATQTETRPSQN 419
+K + ++ + + T + ++ P+ N
Sbjct: 61 NIKEQDFIVCMVSRPKTSTSTPKSAASPAPN 91
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 480 VPSDNSCLFTSIGFVLN 530
+P+D +CLF SI LN
Sbjct: 190 IPADGNCLFASISHQLN 206
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 249 IERVNILCGYPPKALDTSDNSKTLSELGLKTGET 350
+E+ +L PP +L +DNS T + L+T +
Sbjct: 22 LEKTTLLQDIPPGSLSENDNSTTFIKPPLETASS 55
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 300 SDNSKTLSELGLKTGETLIVEEKAV---TKINATQTETRPSQNGVESHETIESCRPGILM 470
SD+S LS+L K+ + V + TK + + + +PS E+H T+ R L
Sbjct: 452 SDSSVPLSQLQKKSQQRNSVSHEIQNRGTKGSPKEPKAKPSTERPETHRTLSYSRLSELS 511
Query: 471 KKVVP 485
K P
Sbjct: 512 KTFSP 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,761
Number of Sequences: 5004
Number of extensions: 43414
Number of successful extensions: 142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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