Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d11
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 468 MKKVVPSDNSCLFTSIGFVLNGSIDTSVHTLMRQI 572
           +K+   SD S LFT +     GS DTS++ +++++
Sbjct: 842 IKRTERSD-SALFTCVATNAFGSDDTSINMIVQEV 875


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 3   SFEKSEVPYIFVRNLFVEILMHF 71
           SF ++  PY    +++VE+L HF
Sbjct: 143 SFLRTVPPYSHQTDVWVELLKHF 165



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 345 ETLIVEEKAVTKINATQTETRPSQNGVES 431
           ++LIV   A+ ++N +++ T P +N  +S
Sbjct: 293 DSLIVLTSALQEMNKSKSITEPPKNCADS 321


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 PGILMKKVVPSDNSC 500
           PG ++KK+ P + +C
Sbjct: 258 PGTILKKLCPQEEAC 272


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 PGILMKKVVPSDNSC 500
           PG ++KK+ P + +C
Sbjct: 173 PGTILKKLCPQEEAC 187


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 PGILMKKVVPSDNSC 500
           PG ++KK+ P + +C
Sbjct: 492 PGTILKKLCPQEEAC 506


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 306 NSKTLSELGLKTGETLIV 359
           N + +  LG+ TGE+++V
Sbjct: 60  NMENVDPLGIHTGESIVV 77


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 133 DIFT*LVFFRSIIYLYFNWVTKCMSIS 53
           DIF  +   R  ++   N +  C+SIS
Sbjct: 224 DIFFNITLRRKTLFYTVNLIVPCVSIS 250


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 443 YCFMRLYSVLG 411
           YCF RL+ ++G
Sbjct: 8   YCFARLFFIIG 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,825
Number of Sequences: 438
Number of extensions: 2908
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)