Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d09
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   3.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   3.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   6.9  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   6.9  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   9.1  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -1

Query: 213 LK*LTGHTPASTYFSRTKN-NNIVNTTATAWSSLIFNMKT*SCFEFYCYFVYNKVLTLIY 37
           L+  TG+T   T   R ++  N +   AT   SLIF      CF  Y   VY      I 
Sbjct: 299 LRKTTGNTAYYTIHERERDPKNAMIQAATQAVSLIFTEPIVVCFTLYLTVVY------II 352

Query: 36  KVTNIEGQPL 7
              N EG P+
Sbjct: 353 NYINFEGYPI 362


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 312 QIISLRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN*N 464
           Q I+  ++    + +P   +T    +T+ + V+T KNS+  ENLN I   N
Sbjct: 492 QTITESSVAKTKSTTPKSTDTPTEATTSPVKVST-KNSNTTENLNGINESN 541


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 229 NSFFYIKITNRAYSGQYVFFSHKEQQHSE 143
           +SF   KI+ R  SG+ ++F  K+ +HS+
Sbjct: 253 SSFSGPKISARTSSGKIIYFPKKKNRHSD 281


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 266 SDDDTVSSISPMSYSANN 319
           SDDDT+SS++ M Y  N+
Sbjct: 23  SDDDTMSSLTRMIYDKNS 40


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 599 NLSFSHKTIIKGRL 558
           N+ FSHKT++K RL
Sbjct: 10  NIGFSHKTVLKRRL 23


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 168 RTKNNNIVNTTATAWSSLIFN 106
           +T N    NTT  AWS ++ N
Sbjct: 149 QTSNPRFANTTREAWSKIVTN 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,836
Number of Sequences: 5004
Number of extensions: 43195
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)