Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18d09
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    28   4.8  
Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    28   6.4  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC103567-5|AAL35728.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.10 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +3

Query: 303 RILQIISLRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLNFITN*NNIVRKP 482
           +IL +   +AL+ VL  + N + T+  +ST+++S+N  +    HE +N   N NN   KP
Sbjct: 154 QILALDDRKALQEVLMLT-NGSNTQLPQSTSSLSINHIQQQKQHEPIN---NNNNTEMKP 209


>Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical
           protein F28C6.2 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 266 SDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNEYIGEHPQ 418
           S++D +    P    +N +    +++ + K   K+  E+E +    GEH Q
Sbjct: 442 SNEDVIPGQKPFERMSNEYFVEWQMNLYKKKLAKQMEEVEENKSQRGEHQQ 492


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 56  LL*TK*Q*NSKQLYVFILKMRLLHAVAVVFTMLLFFVREKYVLAGVCPVSYFNIKKR 226
           LL TK     K  Y+FIL  + LH + V + +    V +   +  +  +SY    KR
Sbjct: 225 LLQTKVTLLMKSTYIFILLFQFLHDLDVGYALFFMVVLDMIAIPLINSISYIVCNKR 281


>Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical
           protein C23H4.3 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 204 LTGHTPASTYFSRTKNNNIVNTTATAWSSLIFN 106
           LT  T   T   +  N+N V TTA+A SSL+ N
Sbjct: 558 LTKTTKGFTSIHQDNNSNTVTTTASAQSSLLKN 590


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 244 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 146
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 543 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 578


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 244 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 146
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 539 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 574


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 244 TVFYLNSFFYIKITNRAYS---GQYVFFSHKEQQHS 146
           T+F     + IK+   AYS   G ++F SHKE++ +
Sbjct: 543 TLFQFTHAYLIKLAKHAYSGLFGSFLFNSHKERREA 578


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 86  KQLYVFILKMRLLHAVAVVFTMLLFFVREKYVLAGVCPVSYFNIKKRI 229
           K + +FI+ M   +   V+ T L+F +    V+A   PVSY+N + +I
Sbjct: 78  KNMMLFIIIM--CNIFGVIRTTLIFSIAFLRVIAICFPVSYYNNRSKI 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,273,501
Number of Sequences: 27780
Number of extensions: 237645
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)