Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d08
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 30 0.19
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.44
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.4
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 1.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 1.4
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 1.4
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 1.8
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 3.1
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 3.1
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 25 9.5
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 9.5
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 9.5
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.19
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Frame = +2
Query: 56 NNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTS--KPSSKQTS 229
NN E + + + S+QST A + T YD G T + P PSS+ +
Sbjct: 86 NNGAEAAAAAARRIAESLQSTKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSSEGPA 145
Query: 230 LQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 376
+ + ++ T ++ + + ++++ + A +S + S
Sbjct: 146 VDIPPSMADITSKVIEGDGVFMQDVEINNVRNRYILVRASTLSEIENKS 194
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.44
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +2
Query: 20 SKSIMDTTP-STENNKREQSTVSQN-LVLNSIQSTAADNDETFYDQDSGRLV-GTPTLLK 190
S S +TP S ++ S SQ+ ++S ST A + T S + P+L
Sbjct: 270 SSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATS--TLQPTTSSPITTSAPSLSS 327
Query: 191 TIPTSKPSSKQTSLQV--VTKLSQNTDLILT 277
+PT+ PSS T ++V TK +T I+T
Sbjct: 328 ALPTTYPSSLSTEVEVEYFTKTITDTSSIVT 358
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 194 IPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEK 307
+ TS PS+ ++ + + LS + DL ++QP+ TA +
Sbjct: 209 VQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHR 246
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.4
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +2
Query: 38 TTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSS 217
T TE Q +S ++ S+ STA + + + L + PTS S
Sbjct: 150 TDEDTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTSSPTSVASK 209
Query: 218 KQTSLQVVTKLSQNTDLILTQPMITAD----TEKYSDIQGSLQ 334
K T L V+K++ + L +T + D K D + S+Q
Sbjct: 210 KAT-LSSVSKVASTSSLPVTSVSASVDPKSAASKVQDAEFSIQ 251
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 14 KFSKSIMDTTPSTENNKREQS---TVSQNLVLNSIQSTAADNDETF 142
K SKSI+ TTPS + N R S T + L + ++ D DE F
Sbjct: 393 KVSKSILKTTPSKKANARSVSFTQTTTDTLSESEKFASNVDLDENF 438
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 272 LTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPS 388
L P++ ++ E S + SL++P +STS SK+ S
Sbjct: 123 LQNPVVDSNNEYESKFRLSLEIPPTDFLSTSTELSKRES 161
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 50 TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIP 199
T+N +RE + VS+ ++ S+++ +D + DSG P +K P
Sbjct: 84 TQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLPIKEPP 133
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 92 LVLNSIQSTAADNDETFYDQDSGRLVGTPTLL 187
LV+N++ + A + +T QD G V PT++
Sbjct: 1172 LVINNVTTAAQNGRDTMAVQDLGVYVAAPTIM 1203
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 38 TTPSTENNKREQSTVSQNLVLNSIQ-STAADNDETFYDQD--SGRLVGTPTLLKTIPTSK 208
++P + + K E + V VL+ +T+A +F S + GTP + K+ P+S
Sbjct: 158 SSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSPPSSS 217
Query: 209 PSSKQTS 229
PS+ S
Sbjct: 218 PSTTNVS 224
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 176 PTLLKTIPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAI 355
P I +KPS+ +S++ VTK T+ T ++ E YS S + ++ +
Sbjct: 120 PNKKDEISPAKPSAIDSSIKDVTKSHPATNANFTADFESSIEESYSTENKSPVILSSSKV 179
Query: 356 STSRHS 373
+S+ S
Sbjct: 180 PSSQWS 185
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 21 PNL*WTLHHQQRIISEN 71
P L WT HH QR I +N
Sbjct: 547 PFLNWTSHHLQRYIPKN 563
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 319 NIRIFFCISSNHWLC 275
N+RIF +S+ +W+C
Sbjct: 596 NVRIFDTVSNRNWIC 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,408
Number of Sequences: 5004
Number of extensions: 41306
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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