Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte18d08
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 33 0.15
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 4.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 4.2
06_02_0059 - 11022306-11022578,11022812-11022881,11022966-110232... 28 5.5
06_02_0053 - 10974209-10974229,10974562-10974621,10974708-109747... 28 5.5
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 27 7.3
06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946 27 9.7
>08_02_1620 -
28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Frame = +2
Query: 197 PTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTE----------KYSDIQGSLQVPTA 346
PT SS+Q +Q+ + L + TQPM+ + ++ +Q LQ PT
Sbjct: 288 PTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQ 347
Query: 347 QAISTSRHSSK----QPSLQ 394
A+ +HS QPSLQ
Sbjct: 348 SAMRQQQHSQSSMHPQPSLQ 367
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +2
Query: 113 STAADNDETFYDQDSGRLVGTPTLLKT--IPTSKPSSKQTSLQVVTKLSQNTDLILTQPM 286
S A+ + + SG L PT + T + S PS +LQ +Q ++ P
Sbjct: 561 SQASSGFTSSFPSFSGSLFSPPTPVATGGLFGSGPSPSTPTLQQPVP-AQMPSILFQPPA 619
Query: 287 ITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPSL 391
TA T + + + Q P Q + + QP+L
Sbjct: 620 QTASTGGFPGVSNTNQAPFGQPTPSQSNMVMQPAL 654
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/102 (19%), Positives = 45/102 (44%)
Frame = +2
Query: 92 LVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSSKQTSLQVVTKLSQNTDLI 271
L ++S Q T AD+ + TP++ + +PTS P + ++ S+ ++I
Sbjct: 1182 LEISSDQHTKADSSVPQQSRPQEPSTSTPSVREVLPTSGPLKDADN---ISNCSERRNVI 1238
Query: 272 LTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPSLQV 397
+ S+ + + +PT A + S S ++ +++
Sbjct: 1239 FIPTKDADNISNCSERRNVISIPTKDADNISNCSERRNVVKI 1280
>06_02_0059 -
11022306-11022578,11022812-11022881,11022966-11023254,
11023770-11024109
Length = 323
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 213 EGLDVGIVFNNVGV 172
EGLDVG+V NN GV
Sbjct: 126 EGLDVGVVVNNAGV 139
>06_02_0053 -
10974209-10974229,10974562-10974621,10974708-10974750,
10975818-10975903,10976405-10976474,10976604-10977265
Length = 313
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 213 EGLDVGIVFNNVGV 172
EGLDVG+V NN GV
Sbjct: 137 EGLDVGVVVNNAGV 150
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 434 APQSPPQLANFLHSPIPTDHNISIEVSHR 520
A +PP++A+F H P+P D + E++ +
Sbjct: 20 AAVAPPRMADFNHVPLPYDGPSAAEIARK 48
>06_02_0049 - 10945765-10945893,10946042-10946110,10947278-10947946
Length = 288
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 213 EGLDVGIVFNNVGV 172
EGLDVG++ NN GV
Sbjct: 138 EGLDVGVLMNNAGV 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,098,455
Number of Sequences: 37544
Number of extensions: 240359
Number of successful extensions: 595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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